Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26732 | 3' | -54.8 | NC_005808.1 | + | 25092 | 0.68 | 0.52288 |
|
Target: 5'- --cAGCGCGCCCGGcGcCGUgggauacagcgggUGCUUCu -3' miRNA: 3'- acaUCGCGCGGGUUaCuGCG-------------ACGAAG- -5' |
|||||||
| 26732 | 3' | -54.8 | NC_005808.1 | + | 25305 | 0.76 | 0.172329 |
|
Target: 5'- aUGgauGCGCGCCCGcgG-CGCcgGCUUCg -3' miRNA: 3'- -ACau-CGCGCGGGUuaCuGCGa-CGAAG- -5' |
|||||||
| 26732 | 3' | -54.8 | NC_005808.1 | + | 27293 | 0.68 | 0.523977 |
|
Target: 5'- ---cGCGCGCCU--UGGCGaagGCUUCc -3' miRNA: 3'- acauCGCGCGGGuuACUGCga-CGAAG- -5' |
|||||||
| 26732 | 3' | -54.8 | NC_005808.1 | + | 28187 | 0.75 | 0.198229 |
|
Target: 5'- --aGGCGCGCCUGGcGACGCccaGCUUCg -3' miRNA: 3'- acaUCGCGCGGGUUaCUGCGa--CGAAG- -5' |
|||||||
| 26732 | 3' | -54.8 | NC_005808.1 | + | 32858 | 0.68 | 0.513043 |
|
Target: 5'- --aAGCGCGCCCAccacGAgcaguucgccCGCgGCUUCg -3' miRNA: 3'- acaUCGCGCGGGUua--CU----------GCGaCGAAG- -5' |
|||||||
| 26732 | 3' | -54.8 | NC_005808.1 | + | 35032 | 0.67 | 0.568519 |
|
Target: 5'- cGUGGaCGUGUCCAagccgGUGGCGCcGCa-- -3' miRNA: 3'- aCAUC-GCGCGGGU-----UACUGCGaCGaag -5' |
|||||||
| 26732 | 3' | -54.8 | NC_005808.1 | + | 42309 | 0.68 | 0.502202 |
|
Target: 5'- --gAGCGCGCCUuccGGCGCaGCUa- -3' miRNA: 3'- acaUCGCGCGGGuuaCUGCGaCGAag -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home