miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26732 5' -60.5 NC_005808.1 + 13634 0.66 0.353029
Target:  5'- -aGCGGCAGCaaGUCcGgCGCgGCCGUc -3'
miRNA:   3'- caCGUCGUCGgcCAGuUgGCG-CGGCG- -5'
26732 5' -60.5 NC_005808.1 + 24301 0.66 0.353029
Target:  5'- -gGgGGCGGUgaGGUCGGCgaGCaGCCGCg -3'
miRNA:   3'- caCgUCGUCGg-CCAGUUGg-CG-CGGCG- -5'
26732 5' -60.5 NC_005808.1 + 39424 0.66 0.353029
Target:  5'- -cGCAGCGgacGCCGGgcuuGCCaUGCUGCg -3'
miRNA:   3'- caCGUCGU---CGGCCagu-UGGcGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 29334 0.66 0.344751
Target:  5'- -gGCGGUcGCCGGccaaguccUCGAaccaCGCGCCGg -3'
miRNA:   3'- caCGUCGuCGGCC--------AGUUg---GCGCGGCg -5'
26732 5' -60.5 NC_005808.1 + 28656 0.66 0.344751
Target:  5'- aGUGCcagaucGguGCCGG-CGGCCuCGCCaGCg -3'
miRNA:   3'- -CACGu-----CguCGGCCaGUUGGcGCGG-CG- -5'
26732 5' -60.5 NC_005808.1 + 2430 0.66 0.344751
Target:  5'- -gGCAGCAgGCCGGccUCGAagauCgGCGCCa- -3'
miRNA:   3'- caCGUCGU-CGGCC--AGUU----GgCGCGGcg -5'
26732 5' -60.5 NC_005808.1 + 11174 0.66 0.344751
Target:  5'- uUGCGuGC-GCUGGUCGGCCGUGgUGa -3'
miRNA:   3'- cACGU-CGuCGGCCAGUUGGCGCgGCg -5'
26732 5' -60.5 NC_005808.1 + 32591 0.66 0.344751
Target:  5'- -gGCGGgGGCCGGg----CGCGCgGCa -3'
miRNA:   3'- caCGUCgUCGGCCaguugGCGCGgCG- -5'
26732 5' -60.5 NC_005808.1 + 29907 0.66 0.336613
Target:  5'- -aGCcaGGCuaucaaGGCgGGccUCGACaCGCGCCGCg -3'
miRNA:   3'- caCG--UCG------UCGgCC--AGUUG-GCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 21189 0.66 0.336613
Target:  5'- -cGCGGCcugcuGCUGGUCug-CGCGuuGCu -3'
miRNA:   3'- caCGUCGu----CGGCCAGuugGCGCggCG- -5'
26732 5' -60.5 NC_005808.1 + 689 0.66 0.336613
Target:  5'- -gGCGGC-GCCGG----CCGgGCCGCc -3'
miRNA:   3'- caCGUCGuCGGCCaguuGGCgCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 40568 0.66 0.336613
Target:  5'- -cGCcgaGGCGGCCGGUauGCCgGUGCUGg -3'
miRNA:   3'- caCG---UCGUCGGCCAguUGG-CGCGGCg -5'
26732 5' -60.5 NC_005808.1 + 26263 0.66 0.336613
Target:  5'- -gGCAcccGcCGGCCuGGUCGGCuCGCGCauCGCg -3'
miRNA:   3'- caCGU---C-GUCGG-CCAGUUG-GCGCG--GCG- -5'
26732 5' -60.5 NC_005808.1 + 27701 0.66 0.336613
Target:  5'- -gGCcGCGcGCCGG-CAGCgGCucGCCGCc -3'
miRNA:   3'- caCGuCGU-CGGCCaGUUGgCG--CGGCG- -5'
26732 5' -60.5 NC_005808.1 + 23926 0.66 0.336613
Target:  5'- cGUGguGUaacaGGCCGGg-GGCgGgCGCCGCc -3'
miRNA:   3'- -CACguCG----UCGGCCagUUGgC-GCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 5802 0.66 0.335807
Target:  5'- -cGCGGCAGCgccagcggauaguCGGgcauGgCGUGCCGCa -3'
miRNA:   3'- caCGUCGUCG-------------GCCagu-UgGCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 4950 0.67 0.328616
Target:  5'- -cGCcacgauGCAGCCGcGU--AUCGCGCUGCu -3'
miRNA:   3'- caCGu-----CGUCGGC-CAguUGGCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 33217 0.67 0.328616
Target:  5'- aUGCAGUGGCUGcaCAauGCaCGCGgCCGCa -3'
miRNA:   3'- cACGUCGUCGGCcaGU--UG-GCGC-GGCG- -5'
26732 5' -60.5 NC_005808.1 + 18132 0.67 0.326244
Target:  5'- -gGCcaAGCAGCaGGUCGucggcgucaaugucGCCGagGCCGCg -3'
miRNA:   3'- caCG--UCGUCGgCCAGU--------------UGGCg-CGGCG- -5'
26732 5' -60.5 NC_005808.1 + 7187 0.67 0.323885
Target:  5'- -cGCccugacGCAGCCGGgacagcgCGAuguccacggcagcauCUGCGCCGCg -3'
miRNA:   3'- caCGu-----CGUCGGCCa------GUU---------------GGCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.