miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26733 3' -53.9 NC_005808.1 + 20615 0.66 0.712319
Target:  5'- aGGCGGCGUcgcagGUcggUgUCGGCCUGCgCu -3'
miRNA:   3'- gUCGUCGCAa----UAa--AgGGUCGGACGgG- -5'
26733 3' -53.9 NC_005808.1 + 42412 0.66 0.705612
Target:  5'- cCGGCAGCGUgacggugCCCAGCgacaccggggcgcauCcGCCUg -3'
miRNA:   3'- -GUCGUCGCAauaaa--GGGUCG---------------GaCGGG- -5'
26733 3' -53.9 NC_005808.1 + 42043 0.66 0.701125
Target:  5'- uGGUcgaGGCGUgGUUUUUCAGCg-GCCCg -3'
miRNA:   3'- gUCG---UCGCAaUAAAGGGUCGgaCGGG- -5'
26733 3' -53.9 NC_005808.1 + 28404 0.66 0.689858
Target:  5'- cCGGCGGCGcggcg-CCaguagauGCCUGUCCa -3'
miRNA:   3'- -GUCGUCGCaauaaaGGgu-----CGGACGGG- -5'
26733 3' -53.9 NC_005808.1 + 19054 0.66 0.689858
Target:  5'- cCGGCGGCGUcga---UCAGCgUGUCCu -3'
miRNA:   3'- -GUCGUCGCAauaaagGGUCGgACGGG- -5'
26733 3' -53.9 NC_005808.1 + 895 0.66 0.678531
Target:  5'- cCAGCauGGUGggGUUcaUCCCGGCCgcgGCa- -3'
miRNA:   3'- -GUCG--UCGCaaUAA--AGGGUCGGa--CGgg -5'
26733 3' -53.9 NC_005808.1 + 1268 0.66 0.678531
Target:  5'- cCGGCgAGCGccgGUaUUCCCGGCCagcGaCCCa -3'
miRNA:   3'- -GUCG-UCGCaa-UA-AAGGGUCGGa--C-GGG- -5'
26733 3' -53.9 NC_005808.1 + 17091 0.66 0.667156
Target:  5'- cCGGC-GCGg---UUCUCGGCCggGCCUu -3'
miRNA:   3'- -GUCGuCGCaauaAAGGGUCGGa-CGGG- -5'
26733 3' -53.9 NC_005808.1 + 35534 0.66 0.667156
Target:  5'- -cGCGGCGUcAUgaaguaCCUGGCC-GCCCc -3'
miRNA:   3'- guCGUCGCAaUAaa----GGGUCGGaCGGG- -5'
26733 3' -53.9 NC_005808.1 + 32202 0.66 0.655746
Target:  5'- -cGCGGgGgauguUUUCUCGcGCCUGUCCg -3'
miRNA:   3'- guCGUCgCaau--AAAGGGU-CGGACGGG- -5'
26733 3' -53.9 NC_005808.1 + 22706 0.66 0.655746
Target:  5'- aAGCAGCaGUUugcgCUCGGUUUGCUCg -3'
miRNA:   3'- gUCGUCG-CAAuaaaGGGUCGGACGGG- -5'
26733 3' -53.9 NC_005808.1 + 8215 0.67 0.644312
Target:  5'- uGGCGGCcaGUUcgUgCgCGGCCgUGCCCu -3'
miRNA:   3'- gUCGUCG--CAAuaAaGgGUCGG-ACGGG- -5'
26733 3' -53.9 NC_005808.1 + 27328 0.67 0.632866
Target:  5'- aGGCGcGCGUUGcUUUCCacguaGGCCggGCCg -3'
miRNA:   3'- gUCGU-CGCAAU-AAAGGg----UCGGa-CGGg -5'
26733 3' -53.9 NC_005808.1 + 10166 0.67 0.62142
Target:  5'- uCAGCAGCcagUGUUuugcuugaucgUCCCAcgucaagcgcacGCCgGCCCg -3'
miRNA:   3'- -GUCGUCGca-AUAA-----------AGGGU------------CGGaCGGG- -5'
26733 3' -53.9 NC_005808.1 + 41579 0.67 0.609983
Target:  5'- uCAGCauGGCcgagUAUUUCCCGGCCagugGCgCg -3'
miRNA:   3'- -GUCG--UCGca--AUAAAGGGUCGGa---CGgG- -5'
26733 3' -53.9 NC_005808.1 + 4296 0.68 0.58264
Target:  5'- uCGGCGGUGaacugcaCCAGCUUGCCg -3'
miRNA:   3'- -GUCGUCGCaauaaagGGUCGGACGGg -5'
26733 3' -53.9 NC_005808.1 + 14674 0.68 0.573576
Target:  5'- uGGguGCGggUGUUgagcgcuugaagCCCGGCCUGCa- -3'
miRNA:   3'- gUCguCGCa-AUAAa-----------GGGUCGGACGgg -5'
26733 3' -53.9 NC_005808.1 + 26697 0.68 0.571315
Target:  5'- gCAGCAGCGgcaagcugCUgGGCCUcaccuacguGCCCg -3'
miRNA:   3'- -GUCGUCGCaauaaa--GGgUCGGA---------CGGG- -5'
26733 3' -53.9 NC_005808.1 + 39424 0.68 0.55331
Target:  5'- -cGCAGCGgacg--CCgGGCUUGCCa -3'
miRNA:   3'- guCGUCGCaauaaaGGgUCGGACGGg -5'
26733 3' -53.9 NC_005808.1 + 37969 0.68 0.542143
Target:  5'- -cGCAGCGUgg---CCCAGCaucCCCg -3'
miRNA:   3'- guCGUCGCAauaaaGGGUCGgacGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.