miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26734 3' -60.5 NC_005808.1 + 30140 0.66 0.357472
Target:  5'- --cGCCGCCgGCCUgcacCGCGUCGg-- -3'
miRNA:   3'- cuuCGGCGGgUGGAac--GCGCGGCacc -5'
26734 3' -60.5 NC_005808.1 + 31508 0.66 0.386738
Target:  5'- --uGCCGCCgGCgUgcugcugggccucgcUGUGuUGCCGUGGa -3'
miRNA:   3'- cuuCGGCGGgUGgA---------------ACGC-GCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 33273 0.74 0.10777
Target:  5'- --cGCCGCCCGCCgcgccgacGUGCGCCGccaGGu -3'
miRNA:   3'- cuuCGGCGGGUGGaa------CGCGCGGCa--CC- -5'
26734 3' -60.5 NC_005808.1 + 34046 0.68 0.280672
Target:  5'- --cGCUGCCCGCCaucgGCGCgGCUGUc- -3'
miRNA:   3'- cuuCGGCGGGUGGaa--CGCG-CGGCAcc -5'
26734 3' -60.5 NC_005808.1 + 34381 0.67 0.309717
Target:  5'- -cGGCCGCCgACCa-GCGCgacuacgagGCCGUGc -3'
miRNA:   3'- cuUCGGCGGgUGGaaCGCG---------CGGCACc -5'
26734 3' -60.5 NC_005808.1 + 34754 0.67 0.317327
Target:  5'- cGAAGcCCGCCuCACCau-CGCGCUGaacaUGGg -3'
miRNA:   3'- -CUUC-GGCGG-GUGGaacGCGCGGC----ACC- -5'
26734 3' -60.5 NC_005808.1 + 34871 0.67 0.332967
Target:  5'- cAAGCCGgCCGCCgagcGUGCGCUGc-- -3'
miRNA:   3'- cUUCGGCgGGUGGaa--CGCGCGGCacc -5'
26734 3' -60.5 NC_005808.1 + 35496 0.71 0.162572
Target:  5'- --cGCaGUCCAUCgugcgcguggGCGCGCCGUGGg -3'
miRNA:   3'- cuuCGgCGGGUGGaa--------CGCGCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 37167 0.68 0.287725
Target:  5'- ---cUCGCCCacGCCgccaucCGCGCCGUGGa -3'
miRNA:   3'- cuucGGCGGG--UGGaac---GCGCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 38152 0.69 0.229139
Target:  5'- aGAAGCCGCaCGCCUggcgguguUGCG-GCCG-GGu -3'
miRNA:   3'- -CUUCGGCGgGUGGA--------ACGCgCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 38509 0.66 0.357472
Target:  5'- --cGCCGCCCACCUgGCcgGC-CUGaUGGc -3'
miRNA:   3'- cuuCGGCGGGUGGAaCG--CGcGGC-ACC- -5'
26734 3' -60.5 NC_005808.1 + 38549 0.68 0.260339
Target:  5'- uGGGCCGCUgGCCUgccGCuCGCCGcGGc -3'
miRNA:   3'- cUUCGGCGGgUGGAa--CGcGCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 40366 0.68 0.287725
Target:  5'- -cGGCCacGCgCCGCCUgcUGCGCGUgGUGc -3'
miRNA:   3'- cuUCGG--CG-GGUGGA--ACGCGCGgCACc -5'
26734 3' -60.5 NC_005808.1 + 41141 0.68 0.287725
Target:  5'- gGAGGCCGCCgACC----GCGCCGUc- -3'
miRNA:   3'- -CUUCGGCGGgUGGaacgCGCGGCAcc -5'
26734 3' -60.5 NC_005808.1 + 41501 0.7 0.218137
Target:  5'- --uGCCGCCUACCgccgccaacaugaagUacGCGCGCCG-GGu -3'
miRNA:   3'- cuuCGGCGGGUGGa--------------A--CGCGCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 41884 0.68 0.285595
Target:  5'- aAAGCCGCCCcuauccugggcgguAUCUUGgGCGCCc-GGc -3'
miRNA:   3'- cUUCGGCGGG--------------UGGAACgCGCGGcaCC- -5'
26734 3' -60.5 NC_005808.1 + 41954 0.66 0.371049
Target:  5'- aAAGCC-CCCGCCUgacccguucaccCGCGCCGaGGc -3'
miRNA:   3'- cUUCGGcGGGUGGAac----------GCGCGGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.