miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26734 5' -55.2 NC_005808.1 + 4188 1.06 0.00097
Target:  5'- uAGCCAGUGGGCGCCGAAAAGUUGGAAu -3'
miRNA:   3'- -UCGGUCACCCGCGGCUUUUCAACCUU- -5'
26734 5' -55.2 NC_005808.1 + 19499 0.7 0.35111
Target:  5'- cGCC-GUGGGCGCCGcc--GUUGGc- -3'
miRNA:   3'- uCGGuCACCCGCGGCuuuuCAACCuu -5'
26734 5' -55.2 NC_005808.1 + 34806 0.7 0.35992
Target:  5'- cGCCuGcUGGGCGgCGAAGGGU-GGAc -3'
miRNA:   3'- uCGGuC-ACCCGCgGCUUUUCAaCCUu -5'
26734 5' -55.2 NC_005808.1 + 36460 0.69 0.396678
Target:  5'- cGGCgAGUGGGUGCUGA-----UGGAAg -3'
miRNA:   3'- -UCGgUCACCCGCGGCUuuucaACCUU- -5'
26734 5' -55.2 NC_005808.1 + 1185 0.68 0.476985
Target:  5'- cGCCGccgGGGUcgGCCGGGuuGUUGGAAu -3'
miRNA:   3'- uCGGUca-CCCG--CGGCUUuuCAACCUU- -5'
26734 5' -55.2 NC_005808.1 + 460 0.66 0.598567
Target:  5'- cGGCCAGcuugcGGGCGCUGucgcGGUcGGAu -3'
miRNA:   3'- -UCGGUCa----CCCGCGGCuuu-UCAaCCUu -5'
26734 5' -55.2 NC_005808.1 + 14855 0.66 0.609983
Target:  5'- cGGCCAGcgccgcacgcUGGGCGCCuuuAAGUUGc-- -3'
miRNA:   3'- -UCGGUC----------ACCCGCGGcuuUUCAACcuu -5'
26734 5' -55.2 NC_005808.1 + 15290 0.66 0.564545
Target:  5'- cGCCuGUGGGCGUCGug-----GGAAg -3'
miRNA:   3'- uCGGuCACCCGCGGCuuuucaaCCUU- -5'
26734 5' -55.2 NC_005808.1 + 31369 0.66 0.598567
Target:  5'- cGCUAGUGGGCGUgggCGGGAAcgUGGc- -3'
miRNA:   3'- uCGGUCACCCGCG---GCUUUUcaACCuu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.