miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26735 5' -54.7 NC_005808.1 + 37377 0.66 0.679045
Target:  5'- cGUGGCGuCCAACAUcCUCGACGuGGg -3'
miRNA:   3'- cCGCUGUcGGUUGUAcGAGCUGU-CCa -5'
26735 5' -54.7 NC_005808.1 + 24623 0.66 0.679045
Target:  5'- aGCGGCAcGUCGaaccacaugGCGUGC-CGGCGGGc -3'
miRNA:   3'- cCGCUGU-CGGU---------UGUACGaGCUGUCCa -5'
26735 5' -54.7 NC_005808.1 + 23652 0.66 0.679045
Target:  5'- cGGCGGCGGgCAGCAacUGCaccaggcgacccUCGGuCGGGc -3'
miRNA:   3'- -CCGCUGUCgGUUGU--ACG------------AGCU-GUCCa -5'
26735 5' -54.7 NC_005808.1 + 11421 0.66 0.679045
Target:  5'- aGCGGCgAGCCGGCGUGCaggucgcCGAUaAGGc -3'
miRNA:   3'- cCGCUG-UCGGUUGUACGa------GCUG-UCCa -5'
26735 5' -54.7 NC_005808.1 + 14894 0.66 0.679045
Target:  5'- cGGCGGCgAGCCGcuGCcgGCgcgCGGCcuGUa -3'
miRNA:   3'- -CCGCUG-UCGGU--UGuaCGa--GCUGucCA- -5'
26735 5' -54.7 NC_005808.1 + 33746 0.66 0.679045
Target:  5'- uGGCGACcgaGGCCAACGcGCUggcccgcguugCGGCuGGc -3'
miRNA:   3'- -CCGCUG---UCGGUUGUaCGA-----------GCUGuCCa -5'
26735 5' -54.7 NC_005808.1 + 9040 0.66 0.679045
Target:  5'- cGCGAUAGCCAGCGgugGC-CGuGCcGGa -3'
miRNA:   3'- cCGCUGUCGGUUGUa--CGaGC-UGuCCa -5'
26735 5' -54.7 NC_005808.1 + 8549 0.66 0.667819
Target:  5'- -uCGACAGCCGcgccgaugGCggGCagCGACAGGc -3'
miRNA:   3'- ccGCUGUCGGU--------UGuaCGa-GCUGUCCa -5'
26735 5' -54.7 NC_005808.1 + 39674 0.66 0.667819
Target:  5'- cGGUGugGGCCGGCAUGggaaUgGGCAagacGGUu -3'
miRNA:   3'- -CCGCugUCGGUUGUACg---AgCUGU----CCA- -5'
26735 5' -54.7 NC_005808.1 + 25744 0.66 0.656558
Target:  5'- cGGCGGCAGCaCGcuggGCGcgcUGCUgGGCGGcGg -3'
miRNA:   3'- -CCGCUGUCG-GU----UGU---ACGAgCUGUC-Ca -5'
26735 5' -54.7 NC_005808.1 + 4513 0.66 0.656558
Target:  5'- gGGCGGC-GCCcgugaacguGGCGUGCUgGGCGGu- -3'
miRNA:   3'- -CCGCUGuCGG---------UUGUACGAgCUGUCca -5'
26735 5' -54.7 NC_005808.1 + 35987 0.66 0.633976
Target:  5'- uGGCGGCGGacuaCGcCAUGCUCuACGuGGUg -3'
miRNA:   3'- -CCGCUGUCg---GUuGUACGAGcUGU-CCA- -5'
26735 5' -54.7 NC_005808.1 + 31010 0.67 0.622676
Target:  5'- cGGCGGcCAGCCGGCGgcccUGggCGGCAuGGc -3'
miRNA:   3'- -CCGCU-GUCGGUUGU----ACgaGCUGU-CCa -5'
26735 5' -54.7 NC_005808.1 + 10916 0.67 0.622676
Target:  5'- uGGCGACcuGCCcGCcgGUUUG-CAGGg -3'
miRNA:   3'- -CCGCUGu-CGGuUGuaCGAGCuGUCCa -5'
26735 5' -54.7 NC_005808.1 + 32916 0.67 0.621547
Target:  5'- cGGCcACGGCCuGCAcggcggcUGUUCGGcCAGGg -3'
miRNA:   3'- -CCGcUGUCGGuUGU-------ACGAGCU-GUCCa -5'
26735 5' -54.7 NC_005808.1 + 26031 0.67 0.600115
Target:  5'- cGGCGAUGGCaucaaAGCccGCgCGGCGGGc -3'
miRNA:   3'- -CCGCUGUCGg----UUGuaCGaGCUGUCCa -5'
26735 5' -54.7 NC_005808.1 + 4880 0.67 0.600115
Target:  5'- cGGCGA--GCCAcgcaauCAUGCguccuucgauguUCGACAGGUc -3'
miRNA:   3'- -CCGCUguCGGUu-----GUACG------------AGCUGUCCA- -5'
26735 5' -54.7 NC_005808.1 + 13030 0.67 0.588872
Target:  5'- uGGCGACGGCCucgucaucGCGUuGCUUGAguGcGg -3'
miRNA:   3'- -CCGCUGUCGGu-------UGUA-CGAGCUguC-Ca -5'
26735 5' -54.7 NC_005808.1 + 13278 0.67 0.577667
Target:  5'- cGGCGACcGCCAccGCcuugaaGUGCUgGGCAaGGg -3'
miRNA:   3'- -CCGCUGuCGGU--UG------UACGAgCUGU-CCa -5'
26735 5' -54.7 NC_005808.1 + 13709 0.68 0.566511
Target:  5'- cGGCGACGGCCAGCAacuacGC-CaGCAGcGa -3'
miRNA:   3'- -CCGCUGUCGGUUGUa----CGaGcUGUC-Ca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.