miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26736 5' -51.4 NC_005808.1 + 6013 1.13 0.001267
Target:  5'- gCGACGACUUCGCCGGUGUUGAACACCu -3'
miRNA:   3'- -GCUGCUGAAGCGGCCACAACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 36525 0.85 0.090324
Target:  5'- uCGACGACUUCGaggCGGUGUgaUGAGCACUc -3'
miRNA:   3'- -GCUGCUGAAGCg--GCCACA--ACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 17283 0.79 0.21808
Target:  5'- cCGGCGACgagCGCCGGUGgcaGGGCcgGCCg -3'
miRNA:   3'- -GCUGCUGaa-GCGGCCACaa-CUUG--UGG- -5'
26736 5' -51.4 NC_005808.1 + 35022 0.75 0.381228
Target:  5'- cCGACGACUUCguggacguguccaaGCCGGUG----GCGCCg -3'
miRNA:   3'- -GCUGCUGAAG--------------CGGCCACaacuUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 9556 0.75 0.38398
Target:  5'- -uGCGAuCUgcUCGCCGGUGgcGAGCAUCc -3'
miRNA:   3'- gcUGCU-GA--AGCGGCCACaaCUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 167 0.74 0.461986
Target:  5'- aGGCGGaugCGCCccGGUGUcgcUGGGCACCg -3'
miRNA:   3'- gCUGCUgaaGCGG--CCACA---ACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 23349 0.73 0.493327
Target:  5'- uCGACGGCcUCGCCGccGaUGAACACg -3'
miRNA:   3'- -GCUGCUGaAGCGGCcaCaACUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 27640 0.73 0.493327
Target:  5'- cCGGCGACUucaacgcgagcaUCGCCGa-GUUGGGCGCg -3'
miRNA:   3'- -GCUGCUGA------------AGCGGCcaCAACUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 25822 0.72 0.521254
Target:  5'- uGGCGACcaucgccuucacgUCGCCGGUGgcu-ACGCCc -3'
miRNA:   3'- gCUGCUGa------------AGCGGCCACaacuUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 8020 0.71 0.61485
Target:  5'- uGGCGccaGCUUCGCCGGUGacagccucGACGCUc -3'
miRNA:   3'- gCUGC---UGAAGCGGCCACaac-----UUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 25561 0.71 0.61485
Target:  5'- cCGAUGAUgucggCGUCGGaGUUGuACGCCg -3'
miRNA:   3'- -GCUGCUGaa---GCGGCCaCAACuUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 13188 0.71 0.61485
Target:  5'- gGGCGccCUUgGCCGGcGUUGuACGCCu -3'
miRNA:   3'- gCUGCu-GAAgCGGCCaCAACuUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 39152 0.71 0.626177
Target:  5'- uCGACGACUUCGa-GGUGgugGcAugACCu -3'
miRNA:   3'- -GCUGCUGAAGCggCCACaa-C-UugUGG- -5'
26736 5' -51.4 NC_005808.1 + 4828 0.71 0.637509
Target:  5'- cCGGCGACaggUCGCCGuaGUcGAugACCa -3'
miRNA:   3'- -GCUGCUGa--AGCGGCcaCAaCUugUGG- -5'
26736 5' -51.4 NC_005808.1 + 24615 0.7 0.664664
Target:  5'- gCGGCGACUUgGUguaacgagucuccuuCGGUGggGuGACACCc -3'
miRNA:   3'- -GCUGCUGAAgCG---------------GCCACaaC-UUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 13121 0.7 0.664664
Target:  5'- cCGACGcggaacuggccgcgcGCUucgUCGCCuGGUGccagGAGCACCu -3'
miRNA:   3'- -GCUGC---------------UGA---AGCGG-CCACaa--CUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 35472 0.7 0.671431
Target:  5'- cCGACGACUUCGC-GGacgUGAGCggggaaACCg -3'
miRNA:   3'- -GCUGCUGAAGCGgCCacaACUUG------UGG- -5'
26736 5' -51.4 NC_005808.1 + 40584 0.7 0.693867
Target:  5'- -cGCGACUUCGCCaGc---GAGCGCCu -3'
miRNA:   3'- gcUGCUGAAGCGGcCacaaCUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 22477 0.69 0.704997
Target:  5'- aGGCGuggcaUUCGacgaCGGUGUgcUGGGCGCCu -3'
miRNA:   3'- gCUGCug---AAGCg---GCCACA--ACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 24082 0.69 0.704997
Target:  5'- gCGGCGACcgCGCgGGgcacGGGCACCc -3'
miRNA:   3'- -GCUGCUGaaGCGgCCacaaCUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.