Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26736 | 5' | -51.4 | NC_005808.1 | + | 14669 | 0.67 | 0.847264 |
Target: 5'- uGGCcugggUGCgGGUGUUGAGCGCUu -3' miRNA: 3'- gCUGcugaaGCGgCCACAACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 34362 | 0.67 | 0.838304 |
Target: 5'- -aGCGACUUCGCCGacga-GGGCACg -3' miRNA: 3'- gcUGCUGAAGCGGCcacaaCUUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 4285 | 0.67 | 0.838304 |
Target: 5'- uGAUGGCcgugUCGgCGGUGaacuGCACCa -3' miRNA: 3'- gCUGCUGa---AGCgGCCACaacuUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 19775 | 0.67 | 0.838304 |
Target: 5'- aGGCGGuCUUCacugauugccagGCCGGcccgGUaGAACACCc -3' miRNA: 3'- gCUGCU-GAAG------------CGGCCa---CAaCUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 16787 | 0.67 | 0.829115 |
Target: 5'- aGGCGAUggUCGCCaGUugccaGUUGGucGCGCCc -3' miRNA: 3'- gCUGCUGa-AGCGGcCA-----CAACU--UGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 28142 | 0.67 | 0.829115 |
Target: 5'- gGGCGGCagcagcUUGCCGGUGgucaGAucgaccACGCCg -3' miRNA: 3'- gCUGCUGa-----AGCGGCCACaa--CU------UGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 730 | 0.67 | 0.829115 |
Target: 5'- gGGCGGCUUUGCCGac----AACGCCg -3' miRNA: 3'- gCUGCUGAAGCGGCcacaacUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 35360 | 0.67 | 0.829115 |
Target: 5'- gCGGcCGACaUCGCCGaGgg-UGAGCGCg -3' miRNA: 3'- -GCU-GCUGaAGCGGC-CacaACUUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 5636 | 0.67 | 0.819706 |
Target: 5'- gCGGCGcaGCUU-GCUGGUGgcUGGACGCg -3' miRNA: 3'- -GCUGC--UGAAgCGGCCACa-ACUUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 5225 | 0.67 | 0.810089 |
Target: 5'- uCGAgGAUguuggaCGCCacGGUGUUGAcguuggcguugGCACCg -3' miRNA: 3'- -GCUgCUGaa----GCGG--CCACAACU-----------UGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 37778 | 0.68 | 0.803238 |
Target: 5'- aCGGCGACcugUCGCCGGccagcaaucccgcAGCGCCa -3' miRNA: 3'- -GCUGCUGa--AGCGGCCacaac--------UUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 30685 | 0.68 | 0.800273 |
Target: 5'- aGGCGGCgggaaUUGUCGGUGUUGuggcgGGCAUg -3' miRNA: 3'- gCUGCUGa----AGCGGCCACAAC-----UUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 13367 | 0.68 | 0.800273 |
Target: 5'- gGACGGacuuCUUCGgCGGac-UGGACGCCa -3' miRNA: 3'- gCUGCU----GAAGCgGCCacaACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 24751 | 0.68 | 0.769755 |
Target: 5'- gGGCGACgagGCCacGGUGgcGGGCAUCa -3' miRNA: 3'- gCUGCUGaagCGG--CCACaaCUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 12112 | 0.68 | 0.769755 |
Target: 5'- uCGACGACUUUcaGCaGGUGacgcGAugACCg -3' miRNA: 3'- -GCUGCUGAAG--CGgCCACaa--CUugUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 17565 | 0.68 | 0.769755 |
Target: 5'- uGAUGuCggCGCCGGUGUUGucgauuuCGCa -3' miRNA: 3'- gCUGCuGaaGCGGCCACAACuu-----GUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 40573 | 0.68 | 0.759265 |
Target: 5'- aGGCGGCcgguaUGCCGGUGcUGGugGCg -3' miRNA: 3'- gCUGCUGaa---GCGGCCACaACUugUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 24167 | 0.69 | 0.748637 |
Target: 5'- uCGACGGCUgcgCGCUucgGcGUGUccaUGAGCGCg -3' miRNA: 3'- -GCUGCUGAa--GCGG---C-CACA---ACUUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 28227 | 0.69 | 0.737884 |
Target: 5'- cCGACGACcaCGCgCGG-GUcGGACugCg -3' miRNA: 3'- -GCUGCUGaaGCG-GCCaCAaCUUGugG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 20474 | 0.69 | 0.719351 |
Target: 5'- uCGGCGAaggccauagccaucgCGuuGGUGUUGAACgaaaGCCg -3' miRNA: 3'- -GCUGCUgaa------------GCggCCACAACUUG----UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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