miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26736 5' -51.4 NC_005808.1 + 167 0.74 0.461986
Target:  5'- aGGCGGaugCGCCccGGUGUcgcUGGGCACCg -3'
miRNA:   3'- gCUGCUgaaGCGG--CCACA---ACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 730 0.67 0.829115
Target:  5'- gGGCGGCUUUGCCGac----AACGCCg -3'
miRNA:   3'- gCUGCUGAAGCGGCcacaacUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 2208 0.66 0.855984
Target:  5'- cCGACGcCcUCGUCGG-GU--AGCACCa -3'
miRNA:   3'- -GCUGCuGaAGCGGCCaCAacUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 4285 0.67 0.838304
Target:  5'- uGAUGGCcgugUCGgCGGUGaacuGCACCa -3'
miRNA:   3'- gCUGCUGa---AGCgGCCACaacuUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 4487 0.66 0.864455
Target:  5'- aCGACGAaacCGCCGGaUGcgcgcGGCGCCa -3'
miRNA:   3'- -GCUGCUgaaGCGGCC-ACaac--UUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 4828 0.71 0.637509
Target:  5'- cCGGCGACaggUCGCCGuaGUcGAugACCa -3'
miRNA:   3'- -GCUGCUGa--AGCGGCcaCAaCUugUGG- -5'
26736 5' -51.4 NC_005808.1 + 5225 0.67 0.810089
Target:  5'- uCGAgGAUguuggaCGCCacGGUGUUGAcguuggcguugGCACCg -3'
miRNA:   3'- -GCUgCUGaa----GCGG--CCACAACU-----------UGUGG- -5'
26736 5' -51.4 NC_005808.1 + 5636 0.67 0.819706
Target:  5'- gCGGCGcaGCUU-GCUGGUGgcUGGACGCg -3'
miRNA:   3'- -GCUGC--UGAAgCGGCCACa-ACUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 6013 1.13 0.001267
Target:  5'- gCGACGACUUCGCCGGUGUUGAACACCu -3'
miRNA:   3'- -GCUGCUGAAGCGGCCACAACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 8020 0.71 0.61485
Target:  5'- uGGCGccaGCUUCGCCGGUGacagccucGACGCUc -3'
miRNA:   3'- gCUGC---UGAAGCGGCCACaac-----UUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 9556 0.75 0.38398
Target:  5'- -uGCGAuCUgcUCGCCGGUGgcGAGCAUCc -3'
miRNA:   3'- gcUGCU-GA--AGCGGCCACaaCUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 10299 0.66 0.856842
Target:  5'- gCGGCGAUgaggucgcgcaacgCGCUGGUGUuuuccUGGAUugCu -3'
miRNA:   3'- -GCUGCUGaa------------GCGGCCACA-----ACUUGugG- -5'
26736 5' -51.4 NC_005808.1 + 12112 0.68 0.769755
Target:  5'- uCGACGACUUUcaGCaGGUGacgcGAugACCg -3'
miRNA:   3'- -GCUGCUGAAG--CGgCCACaa--CUugUGG- -5'
26736 5' -51.4 NC_005808.1 + 13121 0.7 0.664664
Target:  5'- cCGACGcggaacuggccgcgcGCUucgUCGCCuGGUGccagGAGCACCu -3'
miRNA:   3'- -GCUGC---------------UGA---AGCGG-CCACaa--CUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 13188 0.71 0.61485
Target:  5'- gGGCGccCUUgGCCGGcGUUGuACGCCu -3'
miRNA:   3'- gCUGCu-GAAgCGGCCaCAACuUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 13265 0.66 0.855984
Target:  5'- uCGAgGACUUgGCCGGc---GAcCGCCa -3'
miRNA:   3'- -GCUgCUGAAgCGGCCacaaCUuGUGG- -5'
26736 5' -51.4 NC_005808.1 + 13367 0.68 0.800273
Target:  5'- gGACGGacuuCUUCGgCGGac-UGGACGCCa -3'
miRNA:   3'- gCUGCU----GAAGCgGCCacaACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 14202 0.66 0.855984
Target:  5'- uGGCGccGCgcCGCCGGcGUcgaacugGAACACCu -3'
miRNA:   3'- gCUGC--UGaaGCGGCCaCAa------CUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 14617 0.66 0.87267
Target:  5'- gCGuCGGCUUccaugcuuccggCGCCGGUGcgcagaUUGAuaccuuGCACCu -3'
miRNA:   3'- -GCuGCUGAA------------GCGGCCAC------AACU------UGUGG- -5'
26736 5' -51.4 NC_005808.1 + 14669 0.67 0.847264
Target:  5'- uGGCcugggUGCgGGUGUUGAGCGCUu -3'
miRNA:   3'- gCUGcugaaGCGgCCACAACUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.