miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26736 5' -51.4 NC_005808.1 + 14852 0.66 0.855984
Target:  5'- uGGCGGCcagCGCCGcacGcUGGGCGCCu -3'
miRNA:   3'- gCUGCUGaa-GCGGCca-CaACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 16423 0.69 0.716052
Target:  5'- aCGGCcGCgggguaaUCGCCGGcggcGUUGAACACg -3'
miRNA:   3'- -GCUGcUGa------AGCGGCCa---CAACUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 16595 0.66 0.87267
Target:  5'- aGGcCGACcaCGCgaUGGUGUUG-GCGCCg -3'
miRNA:   3'- gCU-GCUGaaGCG--GCCACAACuUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 16787 0.67 0.829115
Target:  5'- aGGCGAUggUCGCCaGUugccaGUUGGucGCGCCc -3'
miRNA:   3'- gCUGCUGa-AGCGGcCA-----CAACU--UGUGG- -5'
26736 5' -51.4 NC_005808.1 + 16886 0.66 0.87267
Target:  5'- aCGACGACccCGCCGcGgggcugGUaUGAGCAgCg -3'
miRNA:   3'- -GCUGCUGaaGCGGC-Ca-----CA-ACUUGUgG- -5'
26736 5' -51.4 NC_005808.1 + 17283 0.79 0.21808
Target:  5'- cCGGCGACgagCGCCGGUGgcaGGGCcgGCCg -3'
miRNA:   3'- -GCUGCUGaa-GCGGCCACaa-CUUG--UGG- -5'
26736 5' -51.4 NC_005808.1 + 17565 0.68 0.769755
Target:  5'- uGAUGuCggCGCCGGUGUUGucgauuuCGCa -3'
miRNA:   3'- gCUGCuGaaGCGGCCACAACuu-----GUGg -5'
26736 5' -51.4 NC_005808.1 + 18389 0.66 0.87267
Target:  5'- uGcCGAUggCGCCGGUGgcGGcCACg -3'
miRNA:   3'- gCuGCUGaaGCGGCCACaaCUuGUGg -5'
26736 5' -51.4 NC_005808.1 + 19775 0.67 0.838304
Target:  5'- aGGCGGuCUUCacugauugccagGCCGGcccgGUaGAACACCc -3'
miRNA:   3'- gCUGCU-GAAG------------CGGCCa---CAaCUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 20182 0.66 0.853393
Target:  5'- -uGCGGCUUCGCCuugucgucgcccucGGUcUUGGcaGCGCCc -3'
miRNA:   3'- gcUGCUGAAGCGG--------------CCAcAACU--UGUGG- -5'
26736 5' -51.4 NC_005808.1 + 20474 0.69 0.719351
Target:  5'- uCGGCGAaggccauagccaucgCGuuGGUGUUGAACgaaaGCCg -3'
miRNA:   3'- -GCUGCUgaa------------GCggCCACAACUUG----UGG- -5'
26736 5' -51.4 NC_005808.1 + 22137 0.66 0.87267
Target:  5'- uCGAacaGGCUUUGCaCGGUGgUGcuGCACUu -3'
miRNA:   3'- -GCUg--CUGAAGCG-GCCACaACu-UGUGG- -5'
26736 5' -51.4 NC_005808.1 + 22477 0.69 0.704997
Target:  5'- aGGCGuggcaUUCGacgaCGGUGUgcUGGGCGCCu -3'
miRNA:   3'- gCUGCug---AAGCg---GCCACA--ACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 23349 0.73 0.493327
Target:  5'- uCGACGGCcUCGCCGccGaUGAACACg -3'
miRNA:   3'- -GCUGCUGaAGCGGCcaCaACUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 23413 0.67 0.847264
Target:  5'- uGAUGAgcgCGCCGGUcagUGcGACGCCg -3'
miRNA:   3'- gCUGCUgaaGCGGCCAca-AC-UUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 24082 0.69 0.704997
Target:  5'- gCGGCGACcgCGCgGGgcacGGGCACCc -3'
miRNA:   3'- -GCUGCUGaaGCGgCCacaaCUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 24167 0.69 0.748637
Target:  5'- uCGACGGCUgcgCGCUucgGcGUGUccaUGAGCGCg -3'
miRNA:   3'- -GCUGCUGAa--GCGG---C-CACA---ACUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 24615 0.7 0.664664
Target:  5'- gCGGCGACUUgGUguaacgagucuccuuCGGUGggGuGACACCc -3'
miRNA:   3'- -GCUGCUGAAgCG---------------GCCACaaC-UUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 24751 0.68 0.769755
Target:  5'- gGGCGACgagGCCacGGUGgcGGGCAUCa -3'
miRNA:   3'- gCUGCUGaagCGG--CCACaaCUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 25561 0.71 0.61485
Target:  5'- cCGAUGAUgucggCGUCGGaGUUGuACGCCg -3'
miRNA:   3'- -GCUGCUGaa---GCGGCCaCAACuUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.