miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26736 5' -51.4 NC_005808.1 + 42189 0.67 0.847264
Target:  5'- cCGACGAUcacCGCCGuGcUGcuggUGGGCGCCc -3'
miRNA:   3'- -GCUGCUGaa-GCGGC-C-ACa---ACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 40584 0.7 0.693867
Target:  5'- -cGCGACUUCGCCaGc---GAGCGCCu -3'
miRNA:   3'- gcUGCUGAAGCGGcCacaaCUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 40573 0.68 0.759265
Target:  5'- aGGCGGCcgguaUGCCGGUGcUGGugGCg -3'
miRNA:   3'- gCUGCUGaa---GCGGCCACaACUugUGg -5'
26736 5' -51.4 NC_005808.1 + 39743 0.66 0.880621
Target:  5'- uCGAaccaGGCcccUCGCUGGUGcUG-GCGCCg -3'
miRNA:   3'- -GCUg---CUGa--AGCGGCCACaACuUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 39152 0.71 0.626177
Target:  5'- uCGACGACUUCGa-GGUGgugGcAugACCu -3'
miRNA:   3'- -GCUGCUGAAGCggCCACaa-C-UugUGG- -5'
26736 5' -51.4 NC_005808.1 + 37817 0.66 0.855984
Target:  5'- cCGGCGuGCUgggCGCa-GUGUgggcGAACGCCg -3'
miRNA:   3'- -GCUGC-UGAa--GCGgcCACAa---CUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 37778 0.68 0.803238
Target:  5'- aCGGCGACcugUCGCCGGccagcaaucccgcAGCGCCa -3'
miRNA:   3'- -GCUGCUGa--AGCGGCCacaac--------UUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 37777 0.66 0.889054
Target:  5'- uCGACGACggCGCCGGccccgaccucuacaaGcUGGccuACGCCa -3'
miRNA:   3'- -GCUGCUGaaGCGGCCa--------------CaACU---UGUGG- -5'
26736 5' -51.4 NC_005808.1 + 36569 0.66 0.864455
Target:  5'- cCGuuCGACUUCaa-GGUGUUcAACACCg -3'
miRNA:   3'- -GCu-GCUGAAGcggCCACAAcUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 36525 0.85 0.090324
Target:  5'- uCGACGACUUCGaggCGGUGUgaUGAGCACUc -3'
miRNA:   3'- -GCUGCUGAAGCg--GCCACA--ACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 35946 0.66 0.864455
Target:  5'- aCGACGGCUUCcCCGGcaaccUGUacgUGuccgcgcgcAGCGCCa -3'
miRNA:   3'- -GCUGCUGAAGcGGCC-----ACA---AC---------UUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 35472 0.7 0.671431
Target:  5'- cCGACGACUUCGC-GGacgUGAGCggggaaACCg -3'
miRNA:   3'- -GCUGCUGAAGCGgCCacaACUUG------UGG- -5'
26736 5' -51.4 NC_005808.1 + 35360 0.67 0.829115
Target:  5'- gCGGcCGACaUCGCCGaGgg-UGAGCGCg -3'
miRNA:   3'- -GCU-GCUGaAGCGGC-CacaACUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 35022 0.75 0.381228
Target:  5'- cCGACGACUUCguggacguguccaaGCCGGUG----GCGCCg -3'
miRNA:   3'- -GCUGCUGAAG--------------CGGCCACaacuUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 34362 0.67 0.838304
Target:  5'- -aGCGACUUCGCCGacga-GGGCACg -3'
miRNA:   3'- gcUGCUGAAGCGGCcacaaCUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 30685 0.68 0.800273
Target:  5'- aGGCGGCgggaaUUGUCGGUGUUGuggcgGGCAUg -3'
miRNA:   3'- gCUGCUGa----AGCGGCCACAAC-----UUGUGg -5'
26736 5' -51.4 NC_005808.1 + 28227 0.69 0.737884
Target:  5'- cCGACGACcaCGCgCGG-GUcGGACugCg -3'
miRNA:   3'- -GCUGCUGaaGCG-GCCaCAaCUUGugG- -5'
26736 5' -51.4 NC_005808.1 + 28142 0.67 0.829115
Target:  5'- gGGCGGCagcagcUUGCCGGUGgucaGAucgaccACGCCg -3'
miRNA:   3'- gCUGCUGa-----AGCGGCCACaa--CU------UGUGG- -5'
26736 5' -51.4 NC_005808.1 + 27640 0.73 0.493327
Target:  5'- cCGGCGACUucaacgcgagcaUCGCCGa-GUUGGGCGCg -3'
miRNA:   3'- -GCUGCUGA------------AGCGGCcaCAACUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 27626 0.66 0.864455
Target:  5'- uGACGAUgg-GCCGGUgGUUGGucgGCAUg -3'
miRNA:   3'- gCUGCUGaagCGGCCA-CAACU---UGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.