Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26736 | 5' | -51.4 | NC_005808.1 | + | 14852 | 0.66 | 0.855984 |
Target: 5'- uGGCGGCcagCGCCGcacGcUGGGCGCCu -3' miRNA: 3'- gCUGCUGaa-GCGGCca-CaACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 14669 | 0.67 | 0.847264 |
Target: 5'- uGGCcugggUGCgGGUGUUGAGCGCUu -3' miRNA: 3'- gCUGcugaaGCGgCCACAACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 14617 | 0.66 | 0.87267 |
Target: 5'- gCGuCGGCUUccaugcuuccggCGCCGGUGcgcagaUUGAuaccuuGCACCu -3' miRNA: 3'- -GCuGCUGAA------------GCGGCCAC------AACU------UGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 14202 | 0.66 | 0.855984 |
Target: 5'- uGGCGccGCgcCGCCGGcGUcgaacugGAACACCu -3' miRNA: 3'- gCUGC--UGaaGCGGCCaCAa------CUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 13367 | 0.68 | 0.800273 |
Target: 5'- gGACGGacuuCUUCGgCGGac-UGGACGCCa -3' miRNA: 3'- gCUGCU----GAAGCgGCCacaACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 13265 | 0.66 | 0.855984 |
Target: 5'- uCGAgGACUUgGCCGGc---GAcCGCCa -3' miRNA: 3'- -GCUgCUGAAgCGGCCacaaCUuGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 13188 | 0.71 | 0.61485 |
Target: 5'- gGGCGccCUUgGCCGGcGUUGuACGCCu -3' miRNA: 3'- gCUGCu-GAAgCGGCCaCAACuUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 13121 | 0.7 | 0.664664 |
Target: 5'- cCGACGcggaacuggccgcgcGCUucgUCGCCuGGUGccagGAGCACCu -3' miRNA: 3'- -GCUGC---------------UGA---AGCGG-CCACaa--CUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 12112 | 0.68 | 0.769755 |
Target: 5'- uCGACGACUUUcaGCaGGUGacgcGAugACCg -3' miRNA: 3'- -GCUGCUGAAG--CGgCCACaa--CUugUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 10299 | 0.66 | 0.856842 |
Target: 5'- gCGGCGAUgaggucgcgcaacgCGCUGGUGUuuuccUGGAUugCu -3' miRNA: 3'- -GCUGCUGaa------------GCGGCCACA-----ACUUGugG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 9556 | 0.75 | 0.38398 |
Target: 5'- -uGCGAuCUgcUCGCCGGUGgcGAGCAUCc -3' miRNA: 3'- gcUGCU-GA--AGCGGCCACaaCUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 8020 | 0.71 | 0.61485 |
Target: 5'- uGGCGccaGCUUCGCCGGUGacagccucGACGCUc -3' miRNA: 3'- gCUGC---UGAAGCGGCCACaac-----UUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 6013 | 1.13 | 0.001267 |
Target: 5'- gCGACGACUUCGCCGGUGUUGAACACCu -3' miRNA: 3'- -GCUGCUGAAGCGGCCACAACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 5636 | 0.67 | 0.819706 |
Target: 5'- gCGGCGcaGCUU-GCUGGUGgcUGGACGCg -3' miRNA: 3'- -GCUGC--UGAAgCGGCCACa-ACUUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 5225 | 0.67 | 0.810089 |
Target: 5'- uCGAgGAUguuggaCGCCacGGUGUUGAcguuggcguugGCACCg -3' miRNA: 3'- -GCUgCUGaa----GCGG--CCACAACU-----------UGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 4828 | 0.71 | 0.637509 |
Target: 5'- cCGGCGACaggUCGCCGuaGUcGAugACCa -3' miRNA: 3'- -GCUGCUGa--AGCGGCcaCAaCUugUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 4487 | 0.66 | 0.864455 |
Target: 5'- aCGACGAaacCGCCGGaUGcgcgcGGCGCCa -3' miRNA: 3'- -GCUGCUgaaGCGGCC-ACaac--UUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 4285 | 0.67 | 0.838304 |
Target: 5'- uGAUGGCcgugUCGgCGGUGaacuGCACCa -3' miRNA: 3'- gCUGCUGa---AGCgGCCACaacuUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 2208 | 0.66 | 0.855984 |
Target: 5'- cCGACGcCcUCGUCGG-GU--AGCACCa -3' miRNA: 3'- -GCUGCuGaAGCGGCCaCAacUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 730 | 0.67 | 0.829115 |
Target: 5'- gGGCGGCUUUGCCGac----AACGCCg -3' miRNA: 3'- gCUGCUGAAGCGGCcacaacUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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