Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26736 | 5' | -51.4 | NC_005808.1 | + | 30685 | 0.68 | 0.800273 |
Target: 5'- aGGCGGCgggaaUUGUCGGUGUUGuggcgGGCAUg -3' miRNA: 3'- gCUGCUGa----AGCGGCCACAAC-----UUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 25561 | 0.71 | 0.61485 |
Target: 5'- cCGAUGAUgucggCGUCGGaGUUGuACGCCg -3' miRNA: 3'- -GCUGCUGaa---GCGGCCaCAACuUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 13188 | 0.71 | 0.61485 |
Target: 5'- gGGCGccCUUgGCCGGcGUUGuACGCCu -3' miRNA: 3'- gCUGCu-GAAgCGGCCaCAACuUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 23349 | 0.73 | 0.493327 |
Target: 5'- uCGACGGCcUCGCCGccGaUGAACACg -3' miRNA: 3'- -GCUGCUGaAGCGGCcaCaACUUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 167 | 0.74 | 0.461986 |
Target: 5'- aGGCGGaugCGCCccGGUGUcgcUGGGCACCg -3' miRNA: 3'- gCUGCUgaaGCGG--CCACA---ACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 9556 | 0.75 | 0.38398 |
Target: 5'- -uGCGAuCUgcUCGCCGGUGgcGAGCAUCc -3' miRNA: 3'- gcUGCU-GA--AGCGGCCACaaCUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 35022 | 0.75 | 0.381228 |
Target: 5'- cCGACGACUUCguggacguguccaaGCCGGUG----GCGCCg -3' miRNA: 3'- -GCUGCUGAAG--------------CGGCCACaacuUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 36525 | 0.85 | 0.090324 |
Target: 5'- uCGACGACUUCGaggCGGUGUgaUGAGCACUc -3' miRNA: 3'- -GCUGCUGAAGCg--GCCACA--ACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 6013 | 1.13 | 0.001267 |
Target: 5'- gCGACGACUUCGCCGGUGUUGAACACCu -3' miRNA: 3'- -GCUGCUGAAGCGGCCACAACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 39152 | 0.71 | 0.626177 |
Target: 5'- uCGACGACUUCGa-GGUGgugGcAugACCu -3' miRNA: 3'- -GCUGCUGAAGCggCCACaa-C-UugUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 4828 | 0.71 | 0.637509 |
Target: 5'- cCGGCGACaggUCGCCGuaGUcGAugACCa -3' miRNA: 3'- -GCUGCUGa--AGCGGCcaCAaCUugUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 17565 | 0.68 | 0.769755 |
Target: 5'- uGAUGuCggCGCCGGUGUUGucgauuuCGCa -3' miRNA: 3'- gCUGCuGaaGCGGCCACAACuu-----GUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 40573 | 0.68 | 0.759265 |
Target: 5'- aGGCGGCcgguaUGCCGGUGcUGGugGCg -3' miRNA: 3'- gCUGCUGaa---GCGGCCACaACUugUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 24167 | 0.69 | 0.748637 |
Target: 5'- uCGACGGCUgcgCGCUucgGcGUGUccaUGAGCGCg -3' miRNA: 3'- -GCUGCUGAa--GCGG---C-CACA---ACUUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 28227 | 0.69 | 0.737884 |
Target: 5'- cCGACGACcaCGCgCGG-GUcGGACugCg -3' miRNA: 3'- -GCUGCUGaaGCG-GCCaCAaCUUGugG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 20474 | 0.69 | 0.719351 |
Target: 5'- uCGGCGAaggccauagccaucgCGuuGGUGUUGAACgaaaGCCg -3' miRNA: 3'- -GCUGCUgaa------------GCggCCACAACUUG----UGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 16423 | 0.69 | 0.716052 |
Target: 5'- aCGGCcGCgggguaaUCGCCGGcggcGUUGAACACg -3' miRNA: 3'- -GCUGcUGa------AGCGGCCa---CAACUUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 24082 | 0.69 | 0.704997 |
Target: 5'- gCGGCGACcgCGCgGGgcacGGGCACCc -3' miRNA: 3'- -GCUGCUGaaGCGgCCacaaCUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 35472 | 0.7 | 0.671431 |
Target: 5'- cCGACGACUUCGC-GGacgUGAGCggggaaACCg -3' miRNA: 3'- -GCUGCUGAAGCGgCCacaACUUG------UGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 16886 | 0.66 | 0.87267 |
Target: 5'- aCGACGACccCGCCGcGgggcugGUaUGAGCAgCg -3' miRNA: 3'- -GCUGCUGaaGCGGC-Ca-----CA-ACUUGUgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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