Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26736 | 5' | -51.4 | NC_005808.1 | + | 17283 | 0.79 | 0.21808 |
Target: 5'- cCGGCGACgagCGCCGGUGgcaGGGCcgGCCg -3' miRNA: 3'- -GCUGCUGaa-GCGGCCACaa-CUUG--UGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 37817 | 0.66 | 0.855984 |
Target: 5'- cCGGCGuGCUgggCGCa-GUGUgggcGAACGCCg -3' miRNA: 3'- -GCUGC-UGAa--GCGgcCACAa---CUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 36569 | 0.66 | 0.864455 |
Target: 5'- cCGuuCGACUUCaa-GGUGUUcAACACCg -3' miRNA: 3'- -GCu-GCUGAAGcggCCACAAcUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 16886 | 0.66 | 0.87267 |
Target: 5'- aCGACGACccCGCCGcGgggcugGUaUGAGCAgCg -3' miRNA: 3'- -GCUGCUGaaGCGGC-Ca-----CA-ACUUGUgG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 24615 | 0.7 | 0.664664 |
Target: 5'- gCGGCGACUUgGUguaacgagucuccuuCGGUGggGuGACACCc -3' miRNA: 3'- -GCUGCUGAAgCG---------------GCCACaaC-UUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 13121 | 0.7 | 0.664664 |
Target: 5'- cCGACGcggaacuggccgcgcGCUucgUCGCCuGGUGccagGAGCACCu -3' miRNA: 3'- -GCUGC---------------UGA---AGCGG-CCACaa--CUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 22477 | 0.69 | 0.704997 |
Target: 5'- aGGCGuggcaUUCGacgaCGGUGUgcUGGGCGCCu -3' miRNA: 3'- gCUGCug---AAGCg---GCCACA--ACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 12112 | 0.68 | 0.769755 |
Target: 5'- uCGACGACUUUcaGCaGGUGacgcGAugACCg -3' miRNA: 3'- -GCUGCUGAAG--CGgCCACaa--CUugUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 37778 | 0.68 | 0.803238 |
Target: 5'- aCGGCGACcugUCGCCGGccagcaaucccgcAGCGCCa -3' miRNA: 3'- -GCUGCUGa--AGCGGCCacaac--------UUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 14202 | 0.66 | 0.855984 |
Target: 5'- uGGCGccGCgcCGCCGGcGUcgaacugGAACACCu -3' miRNA: 3'- gCUGC--UGaaGCGGCCaCAa------CUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 35360 | 0.67 | 0.829115 |
Target: 5'- gCGGcCGACaUCGCCGaGgg-UGAGCGCg -3' miRNA: 3'- -GCU-GCUGaAGCGGC-CacaACUUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 13367 | 0.68 | 0.800273 |
Target: 5'- gGACGGacuuCUUCGgCGGac-UGGACGCCa -3' miRNA: 3'- gCUGCU----GAAGCgGCCacaACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 27640 | 0.73 | 0.493327 |
Target: 5'- cCGGCGACUucaacgcgagcaUCGCCGa-GUUGGGCGCg -3' miRNA: 3'- -GCUGCUGA------------AGCGGCcaCAACUUGUGg -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 42189 | 0.67 | 0.847264 |
Target: 5'- cCGACGAUcacCGCCGuGcUGcuggUGGGCGCCc -3' miRNA: 3'- -GCUGCUGaa-GCGGC-C-ACa---ACUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 25822 | 0.72 | 0.521254 |
Target: 5'- uGGCGACcaucgccuucacgUCGCCGGUGgcu-ACGCCc -3' miRNA: 3'- gCUGCUGa------------AGCGGCCACaacuUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 24751 | 0.68 | 0.769755 |
Target: 5'- gGGCGACgagGCCacGGUGgcGGGCAUCa -3' miRNA: 3'- gCUGCUGaagCGG--CCACaaCUUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 13265 | 0.66 | 0.855984 |
Target: 5'- uCGAgGACUUgGCCGGc---GAcCGCCa -3' miRNA: 3'- -GCUgCUGAAgCGGCCacaaCUuGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 10299 | 0.66 | 0.856842 |
Target: 5'- gCGGCGAUgaggucgcgcaacgCGCUGGUGUuuuccUGGAUugCu -3' miRNA: 3'- -GCUGCUGaa------------GCGGCCACA-----ACUUGugG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 8020 | 0.71 | 0.61485 |
Target: 5'- uGGCGccaGCUUCGCCGGUGacagccucGACGCUc -3' miRNA: 3'- gCUGC---UGAAGCGGCCACaac-----UUGUGG- -5' |
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26736 | 5' | -51.4 | NC_005808.1 | + | 40584 | 0.7 | 0.693867 |
Target: 5'- -cGCGACUUCGCCaGc---GAGCGCCu -3' miRNA: 3'- gcUGCUGAAGCGGcCacaaCUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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