miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26736 5' -51.4 NC_005808.1 + 23349 0.73 0.493327
Target:  5'- uCGACGGCcUCGCCGccGaUGAACACg -3'
miRNA:   3'- -GCUGCUGaAGCGGCcaCaACUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 167 0.74 0.461986
Target:  5'- aGGCGGaugCGCCccGGUGUcgcUGGGCACCg -3'
miRNA:   3'- gCUGCUgaaGCGG--CCACA---ACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 9556 0.75 0.38398
Target:  5'- -uGCGAuCUgcUCGCCGGUGgcGAGCAUCc -3'
miRNA:   3'- gcUGCU-GA--AGCGGCCACaaCUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 35022 0.75 0.381228
Target:  5'- cCGACGACUUCguggacguguccaaGCCGGUG----GCGCCg -3'
miRNA:   3'- -GCUGCUGAAG--------------CGGCCACaacuUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 36525 0.85 0.090324
Target:  5'- uCGACGACUUCGaggCGGUGUgaUGAGCACUc -3'
miRNA:   3'- -GCUGCUGAAGCg--GCCACA--ACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 24167 0.69 0.748637
Target:  5'- uCGACGGCUgcgCGCUucgGcGUGUccaUGAGCGCg -3'
miRNA:   3'- -GCUGCUGAa--GCGG---C-CACA---ACUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 40573 0.68 0.759265
Target:  5'- aGGCGGCcgguaUGCCGGUGcUGGugGCg -3'
miRNA:   3'- gCUGCUGaa---GCGGCCACaACUugUGg -5'
26736 5' -51.4 NC_005808.1 + 14852 0.66 0.855984
Target:  5'- uGGCGGCcagCGCCGcacGcUGGGCGCCu -3'
miRNA:   3'- gCUGCUGaa-GCGGCca-CaACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 20182 0.66 0.853393
Target:  5'- -uGCGGCUUCGCCuugucgucgcccucGGUcUUGGcaGCGCCc -3'
miRNA:   3'- gcUGCUGAAGCGG--------------CCAcAACU--UGUGG- -5'
26736 5' -51.4 NC_005808.1 + 23413 0.67 0.847264
Target:  5'- uGAUGAgcgCGCCGGUcagUGcGACGCCg -3'
miRNA:   3'- gCUGCUgaaGCGGCCAca-AC-UUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 14669 0.67 0.847264
Target:  5'- uGGCcugggUGCgGGUGUUGAGCGCUu -3'
miRNA:   3'- gCUGcugaaGCGgCCACAACUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 34362 0.67 0.838304
Target:  5'- -aGCGACUUCGCCGacga-GGGCACg -3'
miRNA:   3'- gcUGCUGAAGCGGCcacaaCUUGUGg -5'
26736 5' -51.4 NC_005808.1 + 4285 0.67 0.838304
Target:  5'- uGAUGGCcgugUCGgCGGUGaacuGCACCa -3'
miRNA:   3'- gCUGCUGa---AGCgGCCACaacuUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 19775 0.67 0.838304
Target:  5'- aGGCGGuCUUCacugauugccagGCCGGcccgGUaGAACACCc -3'
miRNA:   3'- gCUGCU-GAAG------------CGGCCa---CAaCUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 16787 0.67 0.829115
Target:  5'- aGGCGAUggUCGCCaGUugccaGUUGGucGCGCCc -3'
miRNA:   3'- gCUGCUGa-AGCGGcCA-----CAACU--UGUGG- -5'
26736 5' -51.4 NC_005808.1 + 28142 0.67 0.829115
Target:  5'- gGGCGGCagcagcUUGCCGGUGgucaGAucgaccACGCCg -3'
miRNA:   3'- gCUGCUGa-----AGCGGCCACaa--CU------UGUGG- -5'
26736 5' -51.4 NC_005808.1 + 730 0.67 0.829115
Target:  5'- gGGCGGCUUUGCCGac----AACGCCg -3'
miRNA:   3'- gCUGCUGAAGCGGCcacaacUUGUGG- -5'
26736 5' -51.4 NC_005808.1 + 5225 0.67 0.810089
Target:  5'- uCGAgGAUguuggaCGCCacGGUGUUGAcguuggcguugGCACCg -3'
miRNA:   3'- -GCUgCUGaa----GCGG--CCACAACU-----------UGUGG- -5'
26736 5' -51.4 NC_005808.1 + 30685 0.68 0.800273
Target:  5'- aGGCGGCgggaaUUGUCGGUGUUGuggcgGGCAUg -3'
miRNA:   3'- gCUGCUGa----AGCGGCCACAAC-----UUGUGg -5'
26736 5' -51.4 NC_005808.1 + 17565 0.68 0.769755
Target:  5'- uGAUGuCggCGCCGGUGUUGucgauuuCGCa -3'
miRNA:   3'- gCUGCuGaaGCGGCCACAACuu-----GUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.