Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26739 | 3' | -52.2 | NC_005808.1 | + | 32999 | 0.68 | 0.759091 |
Target: 5'- aCGUCGaacucACGCCCGAgGUGCGcaacguguucGACCGg -3' miRNA: 3'- -GCAGCaac--UGCGGGCU-UAUGU----------CUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 17000 | 0.68 | 0.759091 |
Target: 5'- cCGUgGUUGccacUGCCUGGGccGCAGACCGc -3' miRNA: 3'- -GCAgCAACu---GCGGGCUUa-UGUCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 38982 | 0.68 | 0.705053 |
Target: 5'- gCGgCGUgaaUGGCGCauCCGAAUACAcGGCCa -3' miRNA: 3'- -GCaGCA---ACUGCG--GGCUUAUGU-CUGGc -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 2721 | 0.69 | 0.682828 |
Target: 5'- aCGUUGgccgGACGCuuGAGcGCGGcCCGg -3' miRNA: 3'- -GCAGCaa--CUGCGggCUUaUGUCuGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 7142 | 0.7 | 0.626575 |
Target: 5'- aGUCGUcGGCugcgGCCUGGAUGaccaGGGCCGg -3' miRNA: 3'- gCAGCAaCUG----CGGGCUUAUg---UCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 12447 | 0.75 | 0.358349 |
Target: 5'- uGcCGcUGAUGUCCGAcgcgGUGCAGGCCGg -3' miRNA: 3'- gCaGCaACUGCGGGCU----UAUGUCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 40228 | 0.66 | 0.855472 |
Target: 5'- --aCGcgGGCGUCUGccacGUGCAGGCCGa -3' miRNA: 3'- gcaGCaaCUGCGGGCu---UAUGUCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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