Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 26739 | 5' | -61.8 | NC_005808.1 | + | 33323 | 0.69 | 0.197005 |
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Target: 5'- cGCAGCcGGUGUaCCGGGCcgaccGCUUCCUg -3' miRNA: 3'- uCGUCGcCCGCG-GGCCUG-----UGAAGGAg -5' |
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| 26739 | 5' | -61.8 | NC_005808.1 | + | 37056 | 0.69 | 0.191876 |
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Target: 5'- cGUGGCGGGCGaCCUGGGCGgaaCCUg -3' miRNA: 3'- uCGUCGCCCGC-GGGCCUGUgaaGGAg -5' |
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| 26739 | 5' | -61.8 | NC_005808.1 | + | 10267 | 0.7 | 0.172516 |
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Target: 5'- gGGCGGCGGuuGUCgGGACGCcggCCUUg -3' miRNA: 3'- -UCGUCGCCcgCGGgCCUGUGaa-GGAG- -5' |
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| 26739 | 5' | -61.8 | NC_005808.1 | + | 42208 | 0.7 | 0.167956 |
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Target: 5'- uGCuGGUGGGCGCCCuGGGCAUcgUCUa -3' miRNA: 3'- uCG-UCGCCCGCGGG-CCUGUGaaGGAg -5' |
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| 26739 | 5' | -61.8 | NC_005808.1 | + | 9221 | 0.7 | 0.167956 |
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Target: 5'- cGCAcguucuGCGGcGCGCCCGGcgGCAgUUCCa- -3' miRNA: 3'- uCGU------CGCC-CGCGGGCC--UGUgAAGGag -5' |
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| 26739 | 5' | -61.8 | NC_005808.1 | + | 33865 | 0.7 | 0.159159 |
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Target: 5'- cGGUAGCGccGCGCCCgccGGGCACaUCUUCg -3' miRNA: 3'- -UCGUCGCc-CGCGGG---CCUGUGaAGGAG- -5' |
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| 26739 | 5' | -61.8 | NC_005808.1 | + | 18702 | 0.7 | 0.15078 |
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Target: 5'- aAGCcGCGGGCGU--GGcGCACUUCCUUg -3' miRNA: 3'- -UCGuCGCCCGCGggCC-UGUGAAGGAG- -5' |
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| 26739 | 5' | -61.8 | NC_005808.1 | + | 41901 | 0.71 | 0.135216 |
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Target: 5'- gGGCGGUaucuuGGGCGCCCGGccgGCGCcgCCg- -3' miRNA: 3'- -UCGUCG-----CCCGCGGGCC---UGUGaaGGag -5' |
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| 26739 | 5' | -61.8 | NC_005808.1 | + | 7425 | 1.09 | 0.000139 |
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Target: 5'- gAGCAGCGGGCGCCCGGACACUUCCUCg -3' miRNA: 3'- -UCGUCGCCCGCGGGCCUGUGAAGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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