miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2674 5' -61.5 NC_001491.2 + 88842 0.66 0.711642
Target:  5'- cUCCCCgauauauuuccacgCCAGCCGCUgCGUGGCcg-UCa -3'
miRNA:   3'- -GGGGG--------------GGUUGGCGGaGCACCGccaAG- -5'
2674 5' -61.5 NC_001491.2 + 7095 0.66 0.69533
Target:  5'- aCUacaUCUAACCGCUUCGUGGCGc--- -3'
miRNA:   3'- gGGg--GGGUUGGCGGAGCACCGCcaag -5'
2674 5' -61.5 NC_001491.2 + 33239 0.66 0.675963
Target:  5'- gCCCUgCCAcacgcgGCCGCCUCgGUGGCc---- -3'
miRNA:   3'- -GGGGgGGU------UGGCGGAG-CACCGccaag -5'
2674 5' -61.5 NC_001491.2 + 33623 0.66 0.666226
Target:  5'- gCCCUCCug-CGCCUcCGcGGCGGggCg -3'
miRNA:   3'- gGGGGGGuugGCGGA-GCaCCGCCaaG- -5'
2674 5' -61.5 NC_001491.2 + 24615 0.67 0.636894
Target:  5'- uCCCgCCCCGgggcgGCCGCUgccgCGgcGGCGGccgUCg -3'
miRNA:   3'- -GGG-GGGGU-----UGGCGGa---GCa-CCGCCa--AG- -5'
2674 5' -61.5 NC_001491.2 + 95065 0.67 0.617311
Target:  5'- gCCCCCCCAACa--CUCGUacugcacagaGGUGGg-- -3'
miRNA:   3'- -GGGGGGGUUGgcgGAGCA----------CCGCCaag -5'
2674 5' -61.5 NC_001491.2 + 34545 0.67 0.6046
Target:  5'- aCCCaugccagccgagggCCCCGACCGUCgg--GGCGGaUUCa -3'
miRNA:   3'- -GGG--------------GGGGUUGGCGGagcaCCGCC-AAG- -5'
2674 5' -61.5 NC_001491.2 + 8697 0.67 0.597768
Target:  5'- gCgCCCCGaugugaACCGCCUCGcGGgGGacgUCa -3'
miRNA:   3'- gGgGGGGU------UGGCGGAGCaCCgCCa--AG- -5'
2674 5' -61.5 NC_001491.2 + 122605 0.68 0.588028
Target:  5'- uUCUCUCCAGaa-CCUCGUGGCGGg-- -3'
miRNA:   3'- -GGGGGGGUUggcGGAGCACCGCCaag -5'
2674 5' -61.5 NC_001491.2 + 34927 0.68 0.578317
Target:  5'- uCCCCCCCGGCgGCuCUCG-GcGCGa--- -3'
miRNA:   3'- -GGGGGGGUUGgCG-GAGCaC-CGCcaag -5'
2674 5' -61.5 NC_001491.2 + 12590 0.68 0.578317
Target:  5'- cCCCCCCCuccgacGGCCGCCgccgCGgcaGCGGc-- -3'
miRNA:   3'- -GGGGGGG------UUGGCGGa---GCac-CGCCaag -5'
2674 5' -61.5 NC_001491.2 + 115570 0.68 0.54942
Target:  5'- uUCUCCCCGGcCCGCUgu-UGGCGGUg- -3'
miRNA:   3'- -GGGGGGGUU-GGCGGagcACCGCCAag -5'
2674 5' -61.5 NC_001491.2 + 34763 0.68 0.538933
Target:  5'- gCCCCCCGGCCcgggacggcgcgcGCUUCGgggagcUGGCGGc-- -3'
miRNA:   3'- gGGGGGGUUGG-------------CGGAGC------ACCGCCaag -5'
2674 5' -61.5 NC_001491.2 + 31852 0.69 0.511632
Target:  5'- uCgCCCUCGGCCGCCggcaGcGGCGGUccUCc -3'
miRNA:   3'- -GgGGGGGUUGGCGGag--CaCCGCCA--AG- -5'
2674 5' -61.5 NC_001491.2 + 12114 0.71 0.389634
Target:  5'- gCCCCCCCGGCCGCggcugCGgcgaaGGUGGg-- -3'
miRNA:   3'- -GGGGGGGUUGGCGga---GCa----CCGCCaag -5'
2674 5' -61.5 NC_001491.2 + 143781 0.72 0.336189
Target:  5'- aCCCCauuuaucuuaAACuCGCCUCGUGGgGGUUUg -3'
miRNA:   3'- gGGGGgg--------UUG-GCGGAGCACCgCCAAG- -5'
2674 5' -61.5 NC_001491.2 + 69188 1.11 0.000706
Target:  5'- aCCCCCCCAACCGCCUCGUGGCGGUUCa -3'
miRNA:   3'- -GGGGGGGUUGGCGGAGCACCGCCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.