Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26740 | 3' | -55.8 | NC_005808.1 | + | 9324 | 0.7 | 0.377356 |
Target: 5'- gGCGCAcGUCGGCGcg-GCgGGCGgCGGc -3' miRNA: 3'- aCGCGU-CAGUCGCuaaCG-UCGUgGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 1348 | 0.7 | 0.386438 |
Target: 5'- aGcCGUGGUCGGCGGccUUGC-GCAuCCGGc -3' miRNA: 3'- aC-GCGUCAGUCGCU--AACGuCGU-GGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 15571 | 0.69 | 0.433946 |
Target: 5'- gGCGCcGUCAGUGAcgacGC-GCugCGGa -3' miRNA: 3'- aCGCGuCAGUCGCUaa--CGuCGugGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 15475 | 0.69 | 0.404086 |
Target: 5'- cGCGCGgcGUCAGCu-UUGCaggcuaaGGCACUGGu -3' miRNA: 3'- aCGCGU--CAGUCGcuAACG-------UCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 2128 | 0.69 | 0.414533 |
Target: 5'- uUGCGCcGUUGGCGAgUUGCAGgCACUu- -3' miRNA: 3'- -ACGCGuCAGUCGCU-AACGUC-GUGGcc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 2842 | 0.69 | 0.414533 |
Target: 5'- cGCGCAG-CGGCGc---CAGCACCa- -3' miRNA: 3'- aCGCGUCaGUCGCuaacGUCGUGGcc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 8993 | 0.69 | 0.424173 |
Target: 5'- cGUGCcGcCAGCGGUgGCcGUGCCGGa -3' miRNA: 3'- aCGCGuCaGUCGCUAaCGuCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 10892 | 0.69 | 0.433946 |
Target: 5'- cGCGCggcgggcuGGUCAgGCGGUgcUGCAGCaguuACUGGu -3' miRNA: 3'- aCGCG--------UCAGU-CGCUA--ACGUCG----UGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 13394 | 0.69 | 0.395663 |
Target: 5'- cGCGCGGUUguaGGCGGcaucgUUGCGGUAaCGGu -3' miRNA: 3'- aCGCGUCAG---UCGCU-----AACGUCGUgGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 17872 | 0.69 | 0.395663 |
Target: 5'- cGCGCAGgcgCGGUGGaaGCGGC-CCGa -3' miRNA: 3'- aCGCGUCa--GUCGCUaaCGUCGuGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 393 | 0.69 | 0.432963 |
Target: 5'- aGCGCGGcCAGCGcgcgacuGUUgaGCAGCACgucgCGGg -3' miRNA: 3'- aCGCGUCaGUCGC-------UAA--CGUCGUG----GCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 39051 | 0.69 | 0.403144 |
Target: 5'- gGCGCGGUUGGCGGgacugcgcggugUGCGGCugUa- -3' miRNA: 3'- aCGCGUCAGUCGCUa-----------ACGUCGugGcc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 608 | 0.68 | 0.474294 |
Target: 5'- cUGCG-GGUCGGCca--GCAGCGCCGu -3' miRNA: 3'- -ACGCgUCAGUCGcuaaCGUCGUGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 3562 | 0.68 | 0.49516 |
Target: 5'- aGCGCAG-CAGCGGgcuggGCGuaCACCGa -3' miRNA: 3'- aCGCGUCaGUCGCUaa---CGUc-GUGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 30436 | 0.68 | 0.499384 |
Target: 5'- aGCGCGGgCAGgGccucgcccugaaucaGUUGCcagggGGCGCCGGu -3' miRNA: 3'- aCGCGUCaGUCgC---------------UAACG-----UCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 8305 | 0.68 | 0.443848 |
Target: 5'- aGUGCAGcCAGCGGU-GC-GCGCUGc -3' miRNA: 3'- aCGCGUCaGUCGCUAaCGuCGUGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 34439 | 0.68 | 0.453877 |
Target: 5'- gGCGCAcgcgCAGgGAc-GCAGCGCCGa -3' miRNA: 3'- aCGCGUca--GUCgCUaaCGUCGUGGCc -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 14359 | 0.68 | 0.484673 |
Target: 5'- cGCGguGUCcuggaaGGCGGggGCAuccGCGCCGcGg -3' miRNA: 3'- aCGCguCAG------UCGCUaaCGU---CGUGGC-C- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 7599 | 0.68 | 0.443848 |
Target: 5'- gGCGaCGGUggaCAGCacguGGUcgcGCAGCGCCGGa -3' miRNA: 3'- aCGC-GUCA---GUCG----CUAa--CGUCGUGGCC- -5' |
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26740 | 3' | -55.8 | NC_005808.1 | + | 20423 | 0.68 | 0.452868 |
Target: 5'- cGCGCAGauggugcgcgaauUCGGCaagGAcaagUGCAGCACCa- -3' miRNA: 3'- aCGCGUC-------------AGUCG---CUa---ACGUCGUGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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