miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26740 3' -55.8 NC_005808.1 + 20423 0.68 0.452868
Target:  5'- cGCGCAGauggugcgcgaauUCGGCaagGAcaagUGCAGCACCa- -3'
miRNA:   3'- aCGCGUC-------------AGUCG---CUa---ACGUCGUGGcc -5'
26740 3' -55.8 NC_005808.1 + 19763 0.7 0.377356
Target:  5'- cGCGCuGUCGGCuGUcgGCAGCGCgGc -3'
miRNA:   3'- aCGCGuCAGUCGcUAa-CGUCGUGgCc -5'
26740 3' -55.8 NC_005808.1 + 19069 0.74 0.192768
Target:  5'- aGCGUguccucgccgaGGUCAcGCGAUUGCAG-GCCGGc -3'
miRNA:   3'- aCGCG-----------UCAGU-CGCUAACGUCgUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 18838 0.7 0.377356
Target:  5'- gGCGCA-UCGGCccg-GUGGCGCCGGc -3'
miRNA:   3'- aCGCGUcAGUCGcuaaCGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 18822 0.66 0.604523
Target:  5'- gGCGCAGgaagCuGCGAauuUUGCgcGGCauguagaagGCCGGg -3'
miRNA:   3'- aCGCGUCa---GuCGCU---AACG--UCG---------UGGCC- -5'
26740 3' -55.8 NC_005808.1 + 18716 0.67 0.548999
Target:  5'- aGCGCA-UCGGUacg-GCGGCACgGGa -3'
miRNA:   3'- aCGCGUcAGUCGcuaaCGUCGUGgCC- -5'
26740 3' -55.8 NC_005808.1 + 18367 0.66 0.593332
Target:  5'- uUGC-CGG-CGGCGAgguuggccUUGCcgauGGCGCCGGu -3'
miRNA:   3'- -ACGcGUCaGUCGCU--------AACG----UCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 17872 0.69 0.395663
Target:  5'- cGCGCAGgcgCGGUGGaaGCGGC-CCGa -3'
miRNA:   3'- aCGCGUCa--GUCGCUaaCGUCGuGGCc -5'
26740 3' -55.8 NC_005808.1 + 17542 0.66 0.604523
Target:  5'- cGCGUugacuugauuGGUCAGaauGAUguCGGCGCCGGu -3'
miRNA:   3'- aCGCG----------UCAGUCg--CUAacGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 15571 0.69 0.433946
Target:  5'- gGCGCcGUCAGUGAcgacGC-GCugCGGa -3'
miRNA:   3'- aCGCGuCAGUCGCUaa--CGuCGugGCC- -5'
26740 3' -55.8 NC_005808.1 + 15475 0.69 0.404086
Target:  5'- cGCGCGgcGUCAGCu-UUGCaggcuaaGGCACUGGu -3'
miRNA:   3'- aCGCGU--CAGUCGcuAACG-------UCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 15137 0.66 0.61125
Target:  5'- gUGCGCGGcgcgcuggcauacCAGCGccagggccUGCGGCcGCCGGg -3'
miRNA:   3'- -ACGCGUCa------------GUCGCua------ACGUCG-UGGCC- -5'
26740 3' -55.8 NC_005808.1 + 14766 0.68 0.474294
Target:  5'- gGCGCGGcCGGCGccaccgcggGCAGCGCgCGc -3'
miRNA:   3'- aCGCGUCaGUCGCuaa------CGUCGUG-GCc -5'
26740 3' -55.8 NC_005808.1 + 14359 0.68 0.484673
Target:  5'- cGCGguGUCcuggaaGGCGGggGCAuccGCGCCGcGg -3'
miRNA:   3'- aCGCguCAG------UCGCUaaCGU---CGUGGC-C- -5'
26740 3' -55.8 NC_005808.1 + 13904 0.67 0.56
Target:  5'- gGCGUcggGGUUguuccaguucagGGCGAUgucgcGCAGCGCCGu -3'
miRNA:   3'- aCGCG---UCAG------------UCGCUAa----CGUCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 13728 0.7 0.386438
Target:  5'- cGC-CAG-CAGCGAggacguggcGCGGCGCUGGg -3'
miRNA:   3'- aCGcGUCaGUCGCUaa-------CGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 13394 0.69 0.395663
Target:  5'- cGCGCGGUUguaGGCGGcaucgUUGCGGUAaCGGu -3'
miRNA:   3'- aCGCGUCAG---UCGCU-----AACGUCGUgGCC- -5'
26740 3' -55.8 NC_005808.1 + 13280 0.73 0.252212
Target:  5'- gGCGUcuuUCAGCgccGAUUGCAGCgcGCCGGg -3'
miRNA:   3'- aCGCGuc-AGUCG---CUAACGUCG--UGGCC- -5'
26740 3' -55.8 NC_005808.1 + 11744 0.67 0.505749
Target:  5'- uUGUGCGaacugaUCGGCGAcaggUUGCAGCggauuuGCCGGc -3'
miRNA:   3'- -ACGCGUc-----AGUCGCU----AACGUCG------UGGCC- -5'
26740 3' -55.8 NC_005808.1 + 11250 0.66 0.571062
Target:  5'- aGCGU----GGCGAUgaggguuugcgcUGCGGCGCUGGg -3'
miRNA:   3'- aCGCGucagUCGCUA------------ACGUCGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.