Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26740 | 5' | -64.2 | NC_005808.1 | + | 20176 | 0.66 | 0.2382 |
Target: 5'- gCGCCuugcGGC-UUCGCCUUgUCGUCGCCCu -3' miRNA: 3'- -GCGG----CCGcAGGUGGGA-AGCGGCGGGu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 19178 | 0.67 | 0.220942 |
Target: 5'- gGCCGGCGUCgCACugaCCggCG-CGCUCAu -3' miRNA: 3'- gCGGCCGCAG-GUG---GGaaGCgGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 18093 | 0.71 | 0.117992 |
Target: 5'- aGCCGGCGcgaaccaggaCGCCUUcgCGCCGUCCGg -3' miRNA: 3'- gCGGCCGCag--------GUGGGAa-GCGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 16817 | 0.7 | 0.124496 |
Target: 5'- gCGCCGcGCGcaucgcggCCAUCgUUgcCGCCGCCCAg -3' miRNA: 3'- -GCGGC-CGCa-------GGUGGgAA--GCGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 14389 | 0.66 | 0.250322 |
Target: 5'- uCGUCGGCGUggCCgACCUggacaaggCGCCGCaCCu -3' miRNA: 3'- -GCGGCCGCA--GG-UGGGaa------GCGGCG-GGu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 14212 | 0.68 | 0.183365 |
Target: 5'- cCGCCGGCGUCgaacuggaacaccuCGCcaaggaaaccauCCgcgCGCUGCCCGa -3' miRNA: 3'- -GCGGCCGCAG--------------GUG------------GGaa-GCGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 14054 | 0.66 | 0.256572 |
Target: 5'- gGCCGGCGgCCGCaaggucgUGCCGUUCAa -3' miRNA: 3'- gCGGCCGCaGGUGggaa---GCGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 13275 | 0.66 | 0.250322 |
Target: 5'- gGCCGGCGaCCGCCa----CCGCCUu -3' miRNA: 3'- gCGGCCGCaGGUGGgaagcGGCGGGu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 10528 | 0.67 | 0.210037 |
Target: 5'- cCGCCGGCca-CGCUUUcCGCCGCCa- -3' miRNA: 3'- -GCGGCCGcagGUGGGAaGCGGCGGgu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 8625 | 0.69 | 0.153964 |
Target: 5'- gGCCGGUa--CGCCCUUCGgaaaCGCCCc -3' miRNA: 3'- gCGGCCGcagGUGGGAAGCg---GCGGGu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 8184 | 0.7 | 0.134879 |
Target: 5'- gCGCUGGCGUCCuGCCCgUUCGUCaGCgaCAu -3' miRNA: 3'- -GCGGCCGCAGG-UGGG-AAGCGG-CGg-GU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 8050 | 0.68 | 0.189617 |
Target: 5'- uGCCGcCGUCCaugacgcgcGCCCaggUCGCUGCCUu -3' miRNA: 3'- gCGGCcGCAGG---------UGGGa--AGCGGCGGGu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 7929 | 0.72 | 0.092465 |
Target: 5'- gCGCuCGGCGUCCACCUUcaCGCCacgGCCa- -3' miRNA: 3'- -GCG-GCCGCAGGUGGGAa-GCGG---CGGgu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 7784 | 1.08 | 0.000138 |
Target: 5'- gCGCCGGCGUCCACCCUUCGCCGCCCAg -3' miRNA: 3'- -GCGGCCGCAGGUGGGAAGCGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 7231 | 0.7 | 0.124496 |
Target: 5'- gCGCC-GCGcUCACCCUcggcgaugUCgGCCGCCCAg -3' miRNA: 3'- -GCGGcCGCaGGUGGGA--------AG-CGGCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 6736 | 0.67 | 0.215431 |
Target: 5'- aGCaCGGCGUCgGCCU--UGgCGCCCc -3' miRNA: 3'- gCG-GCCGCAGgUGGGaaGCgGCGGGu -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 6396 | 0.69 | 0.146052 |
Target: 5'- gGCCGGC--CgGCCCgguguagUCGCgGCCCAu -3' miRNA: 3'- gCGGCCGcaGgUGGGa------AGCGgCGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 6326 | 0.66 | 0.244199 |
Target: 5'- aCGCgGcGCGuUCCGCCCcagccaaagCGCCcgGCCCGa -3' miRNA: 3'- -GCGgC-CGC-AGGUGGGaa-------GCGG--CGGGU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 5528 | 0.71 | 0.108826 |
Target: 5'- aCGCCGGCcgcccagguUCCGCCCaggUCGCcCGCCaCGg -3' miRNA: 3'- -GCGGCCGc--------AGGUGGGa--AGCG-GCGG-GU- -5' |
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26740 | 5' | -64.2 | NC_005808.1 | + | 3988 | 0.68 | 0.189617 |
Target: 5'- aCGCCaGCagauagauGUCCGCCCaaaacgCGCCGgCCAc -3' miRNA: 3'- -GCGGcCG--------CAGGUGGGaa----GCGGCgGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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