miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26741 5' -60.4 NC_005808.1 + 13232 0.68 0.285002
Target:  5'- -cCGAgggcugGGGCaaGGcCACCGGCGCGUg -3'
miRNA:   3'- caGCUa-----CUCGcaCC-GUGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 37064 0.68 0.277969
Target:  5'- -gCGAccUGGGCGgaaccugGGCgGCCGGCGUGUc -3'
miRNA:   3'- caGCU--ACUCGCa------CCG-UGGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 4666 0.68 0.271075
Target:  5'- gGUUGuUG-GCG-GGCACCaGCGCGCc -3'
miRNA:   3'- -CAGCuACuCGCaCCGUGGcCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 15176 0.68 0.264319
Target:  5'- -cCGccGGGCGcgGuGCGCCaGGCGCGCg -3'
miRNA:   3'- caGCuaCUCGCa-C-CGUGG-CCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 31212 0.68 0.2577
Target:  5'- gGUCGA-GGGCGaaaGCAugaagaaccCCGGCGCGCg -3'
miRNA:   3'- -CAGCUaCUCGCac-CGU---------GGCCGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 25782 0.69 0.24487
Target:  5'- -aCGAUGGccGCGauGCGCgCGGCGCGCUc -3'
miRNA:   3'- caGCUACU--CGCacCGUG-GCCGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 24272 0.69 0.220803
Target:  5'- ----uUGAGCGUGGCGCCGGacaGUGa- -3'
miRNA:   3'- cagcuACUCGCACCGUGGCCg--CGCga -5'
26741 5' -60.4 NC_005808.1 + 2722 0.7 0.204101
Target:  5'- cGUUGGccggacgcuUGAGCGcGGC-CCGGCGCuGCUc -3'
miRNA:   3'- -CAGCU---------ACUCGCaCCGuGGCCGCG-CGA- -5'
26741 5' -60.4 NC_005808.1 + 18912 0.7 0.198782
Target:  5'- gGUCGAUGAG-GUcGGCGCC--CGCGCUg -3'
miRNA:   3'- -CAGCUACUCgCA-CCGUGGccGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 28735 0.71 0.183544
Target:  5'- --gGAUGAGCGccuUGGCAUcguccagcgCGGUGCGCUu -3'
miRNA:   3'- cagCUACUCGC---ACCGUG---------GCCGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 8161 0.71 0.178699
Target:  5'- cGUCGAUGAuGCGgcccaggaaGGCGCUGGCGUcCUg -3'
miRNA:   3'- -CAGCUACU-CGCa--------CCGUGGCCGCGcGA- -5'
26741 5' -60.4 NC_005808.1 + 16236 0.71 0.16663
Target:  5'- cUCGGUGAGCGgcacgauauggcggaUGGCGuuGGCcucGCGCg -3'
miRNA:   3'- cAGCUACUCGC---------------ACCGUggCCG---CGCGa -5'
26741 5' -60.4 NC_005808.1 + 9985 0.75 0.087127
Target:  5'- -aCGGUGAGCGUGGCggggucgaaaguGCCG-CGCGCc -3'
miRNA:   3'- caGCUACUCGCACCG------------UGGCcGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 12599 0.77 0.065547
Target:  5'- cGUCGAUGAauuuGCGcaUGGCGCCGaCGCGCUc -3'
miRNA:   3'- -CAGCUACU----CGC--ACCGUGGCcGCGCGA- -5'
26741 5' -60.4 NC_005808.1 + 6611 0.78 0.050608
Target:  5'- uGUCGAUGAccagcgggcGCGUGGCGCUG-CGCGCg -3'
miRNA:   3'- -CAGCUACU---------CGCACCGUGGCcGCGCGa -5'
26741 5' -60.4 NC_005808.1 + 9858 1.08 0.000267
Target:  5'- cGUCGAUGAGCGUGGCACCGGCGCGCUg -3'
miRNA:   3'- -CAGCUACUCGCACCGUGGCCGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.