miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26742 3' -62 NC_005808.1 + 17603 0.66 0.278595
Target:  5'- gGCuGCGCGUuguCGAUaccGGCCUCgauguuuGCCGCa -3'
miRNA:   3'- aCGuCGCGCG---GCUA---CCGGAG-------CGGUGa -5'
26742 3' -62 NC_005808.1 + 20741 0.66 0.272399
Target:  5'- aUGCuGCugGCGCCGuagaGGCgCUgCGCCGCg -3'
miRNA:   3'- -ACGuCG--CGCGGCua--CCG-GA-GCGGUGa -5'
26742 3' -62 NC_005808.1 + 8964 0.66 0.272399
Target:  5'- gGUGGcCGUGCCGGauucgcagcggUGGCCgUGCCGCc -3'
miRNA:   3'- aCGUC-GCGCGGCU-----------ACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 24646 0.66 0.272399
Target:  5'- gUGcCGGCGgGCCagGAUGGUgUUGUCGCg -3'
miRNA:   3'- -AC-GUCGCgCGG--CUACCGgAGCGGUGa -5'
26742 3' -62 NC_005808.1 + 36107 0.67 0.265644
Target:  5'- gGCaAGCGCGUgaaUGcgGGCCUgCGCgGCg -3'
miRNA:   3'- aCG-UCGCGCG---GCuaCCGGA-GCGgUGa -5'
26742 3' -62 NC_005808.1 + 14820 0.67 0.264976
Target:  5'- gGCGGCGCugccuucgcccagGUCGAUgccguuggcGGCCagCGCCGCa -3'
miRNA:   3'- aCGUCGCG-------------CGGCUA---------CCGGa-GCGGUGa -5'
26742 3' -62 NC_005808.1 + 40592 0.67 0.264976
Target:  5'- cGcCAGCgaGCGCCug-GGCCUCaagaucaGCCACUg -3'
miRNA:   3'- aC-GUCG--CGCGGcuaCCGGAG-------CGGUGA- -5'
26742 3' -62 NC_005808.1 + 39183 0.67 0.259025
Target:  5'- aGUAGCGgGgCCGAaaGGCCcCGCCAa- -3'
miRNA:   3'- aCGUCGCgC-GGCUa-CCGGaGCGGUga -5'
26742 3' -62 NC_005808.1 + 8550 0.67 0.259025
Target:  5'- cGaCAGcCGCGCCGAUGGCgggcaGCgACa -3'
miRNA:   3'- aC-GUC-GCGCGGCUACCGgag--CGgUGa -5'
26742 3' -62 NC_005808.1 + 28184 0.67 0.252542
Target:  5'- cGCAgGCGCGCC--UGGCgaCGCCcaGCUu -3'
miRNA:   3'- aCGU-CGCGCGGcuACCGgaGCGG--UGA- -5'
26742 3' -62 NC_005808.1 + 19365 0.67 0.246192
Target:  5'- aGCgaGGCGCgGUCGGUGGCCgagGCCGa- -3'
miRNA:   3'- aCG--UCGCG-CGGCUACCGGag-CGGUga -5'
26742 3' -62 NC_005808.1 + 29978 0.67 0.246192
Target:  5'- aGCAGCGaUGCCGAgcgcGUCggCGCCAUg -3'
miRNA:   3'- aCGUCGC-GCGGCUac--CGGa-GCGGUGa -5'
26742 3' -62 NC_005808.1 + 20214 0.67 0.233891
Target:  5'- gGCAGCGCccgcgGCCGGcuguUGGCCUugggUGCCuuGCUc -3'
miRNA:   3'- aCGUCGCG-----CGGCU----ACCGGA----GCGG--UGA- -5'
26742 3' -62 NC_005808.1 + 9197 0.68 0.227937
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 27485 0.68 0.227937
Target:  5'- cGCAccacGCGaggauGCCGgcGGCCUCgGCCGCc -3'
miRNA:   3'- aCGU----CGCg----CGGCuaCCGGAG-CGGUGa -5'
26742 3' -62 NC_005808.1 + 9245 0.68 0.227937
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 29515 0.68 0.227937
Target:  5'- uUGC-GCGCGUgGA-GGCCgagCGCCAa- -3'
miRNA:   3'- -ACGuCGCGCGgCUaCCGGa--GCGGUga -5'
26742 3' -62 NC_005808.1 + 7545 0.68 0.227937
Target:  5'- gGCGGCGUGCuCGAUcuGCggCGCCACc -3'
miRNA:   3'- aCGUCGCGCG-GCUAc-CGgaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 9341 0.68 0.227937
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 9293 0.68 0.227937
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.