miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26742 3' -62 NC_005808.1 + 1142 0.66 0.286321
Target:  5'- aGCAGCG-GCCGuuuGCgCUCGCCGu- -3'
miRNA:   3'- aCGUCGCgCGGCuacCG-GAGCGGUga -5'
26742 3' -62 NC_005808.1 + 3755 0.66 0.286321
Target:  5'- gGCGGCacuucuCGCCGggGGCCUUGaguucgacCCACa -3'
miRNA:   3'- aCGUCGc-----GCGGCuaCCGGAGC--------GGUGa -5'
26742 3' -62 NC_005808.1 + 4529 0.68 0.205391
Target:  5'- cGUGGCGUGCUGGgcGGUCgugcCGCCGCg -3'
miRNA:   3'- aCGUCGCGCGGCUa-CCGGa---GCGGUGa -5'
26742 3' -62 NC_005808.1 + 4878 0.68 0.210289
Target:  5'- uUGCccAGCGCGgCGAcggcGGCCUCguuuucgGCCACg -3'
miRNA:   3'- -ACG--UCGCGCgGCUa---CCGGAG-------CGGUGa -5'
26742 3' -62 NC_005808.1 + 5138 0.66 0.300798
Target:  5'- cUGCAaCGUGCCGcgcaggcGGCCgUCGCUGCUc -3'
miRNA:   3'- -ACGUcGCGCGGCua-----CCGG-AGCGGUGA- -5'
26742 3' -62 NC_005808.1 + 5763 0.68 0.200064
Target:  5'- aGCgAGUGCGCCag-GGCCUUGaCCAUc -3'
miRNA:   3'- aCG-UCGCGCGGcuaCCGGAGC-GGUGa -5'
26742 3' -62 NC_005808.1 + 7545 0.68 0.227937
Target:  5'- gGCGGCGUGCuCGAUcuGCggCGCCACc -3'
miRNA:   3'- aCGUCGCGCG-GCUAc-CGgaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 7953 0.69 0.175205
Target:  5'- cGaCAGCuuGCCcGUGGCCUCGgCGCg -3'
miRNA:   3'- aC-GUCGcgCGGcUACCGGAGCgGUGa -5'
26742 3' -62 NC_005808.1 + 8550 0.67 0.259025
Target:  5'- cGaCAGcCGCGCCGAUGGCgggcaGCgACa -3'
miRNA:   3'- aC-GUC-GCGCGGCUACCGgag--CGgUGa -5'
26742 3' -62 NC_005808.1 + 8852 0.68 0.205391
Target:  5'- gGcCAGCGCGU---UGGCCucggUCGCCACg -3'
miRNA:   3'- aC-GUCGCGCGgcuACCGG----AGCGGUGa -5'
26742 3' -62 NC_005808.1 + 8915 0.78 0.040012
Target:  5'- gGCGGCGCGCuCGAUGGCUucgggcguggacaguUCGCCGa- -3'
miRNA:   3'- aCGUCGCGCG-GCUACCGG---------------AGCGGUga -5'
26742 3' -62 NC_005808.1 + 8964 0.66 0.272399
Target:  5'- gGUGGcCGUGCCGGauucgcagcggUGGCCgUGCCGCc -3'
miRNA:   3'- aCGUC-GCGCGGCU-----------ACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 9005 0.68 0.222111
Target:  5'- gGUGGcCGUGCCGGauucgccagcggUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGCU------------ACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 9053 0.68 0.222111
Target:  5'- gGUGGcCGUGCCGGauucgccagcggUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGCU------------ACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 9101 0.68 0.227937
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 9149 0.68 0.227937
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 9197 0.68 0.227937
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 9245 0.68 0.227937
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 9293 0.68 0.227937
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26742 3' -62 NC_005808.1 + 9341 0.68 0.227937
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.