miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26742 3' -62 NC_005808.1 + 28653 0.78 0.03733
Target:  5'- cGCAGUGCcagaucgguGCCGgcGGCCUCGCCAg- -3'
miRNA:   3'- aCGUCGCG---------CGGCuaCCGGAGCGGUga -5'
26742 3' -62 NC_005808.1 + 12017 0.69 0.179946
Target:  5'- aGCAGCGCgGCCG-UGGCCggcgaggucUUGCCcaGCg -3'
miRNA:   3'- aCGUCGCG-CGGCuACCGG---------AGCGG--UGa -5'
26742 3' -62 NC_005808.1 + 7953 0.69 0.175205
Target:  5'- cGaCAGCuuGCCcGUGGCCUCGgCGCg -3'
miRNA:   3'- aC-GUCGcgCGGcUACCGGAGCgGUGa -5'
26742 3' -62 NC_005808.1 + 21826 0.7 0.161643
Target:  5'- aGCGGCGgGUugcucuuguaguCGAUGGCCUgCGCCuuGCg -3'
miRNA:   3'- aCGUCGCgCG------------GCUACCGGA-GCGG--UGa -5'
26742 3' -62 NC_005808.1 + 27837 0.7 0.153134
Target:  5'- cGCGGUgGCGCC---GGCCgCGCCGCUg -3'
miRNA:   3'- aCGUCG-CGCGGcuaCCGGaGCGGUGA- -5'
26742 3' -62 NC_005808.1 + 19868 0.7 0.153134
Target:  5'- aGUucgGGCGUGCCGAaGGCgUCGCgCGCc -3'
miRNA:   3'- aCG---UCGCGCGGCUaCCGgAGCG-GUGa -5'
26742 3' -62 NC_005808.1 + 31511 0.7 0.141132
Target:  5'- cGcCGGCGUGCUGcugGGCCUCGCUg-- -3'
miRNA:   3'- aC-GUCGCGCGGCua-CCGGAGCGGuga -5'
26742 3' -62 NC_005808.1 + 28359 0.71 0.137326
Target:  5'- gGCAGCGCGCgGAUGGUUUC-CUugGCg -3'
miRNA:   3'- aCGUCGCGCGgCUACCGGAGcGG--UGa -5'
26742 3' -62 NC_005808.1 + 27701 0.72 0.113227
Target:  5'- gGCcGCGCGCCGGcagcGG-CUCGCCGCc -3'
miRNA:   3'- aCGuCGCGCGGCUa---CCgGAGCGGUGa -5'
26742 3' -62 NC_005808.1 + 10698 0.72 0.107103
Target:  5'- gGCAGCGCGCac--GGCCUCgGCCGa- -3'
miRNA:   3'- aCGUCGCGCGgcuaCCGGAG-CGGUga -5'
26742 3' -62 NC_005808.1 + 28149 0.73 0.093127
Target:  5'- aGCAGCuuGCCGGUGGUCagaUCGaCCACg -3'
miRNA:   3'- aCGUCGcgCGGCUACCGG---AGC-GGUGa -5'
26742 3' -62 NC_005808.1 + 13020 0.73 0.08559
Target:  5'- cGCAGCGCaguGgCGAcGGCCUCGUCAUc -3'
miRNA:   3'- aCGUCGCG---CgGCUaCCGGAGCGGUGa -5'
26742 3' -62 NC_005808.1 + 13298 0.74 0.074304
Target:  5'- uUGCAGCGCGCCGG-GGCCggCGUUg-- -3'
miRNA:   3'- -ACGUCGCGCGGCUaCCGGa-GCGGuga -5'
26742 3' -62 NC_005808.1 + 23750 0.74 0.072225
Target:  5'- aGCAGCGCcauGCCGGcgccaccgGGCCgaugCGCCGCg -3'
miRNA:   3'- aCGUCGCG---CGGCUa-------CCGGa---GCGGUGa -5'
26742 3' -62 NC_005808.1 + 29359 0.75 0.070202
Target:  5'- -cCA-CGCGCCGGUGGCCUUGCCcCa -3'
miRNA:   3'- acGUcGCGCGGCUACCGGAGCGGuGa -5'
26742 3' -62 NC_005808.1 + 24557 0.75 0.062641
Target:  5'- cGCAGCGCGgCGAUggcgaGGCCg-GCCACg -3'
miRNA:   3'- aCGUCGCGCgGCUA-----CCGGagCGGUGa -5'
26742 3' -62 NC_005808.1 + 23335 0.75 0.059161
Target:  5'- gGUAGcCGCGCaauuCGAcGGCCUCGCCGCc -3'
miRNA:   3'- aCGUC-GCGCG----GCUaCCGGAGCGGUGa -5'
26742 3' -62 NC_005808.1 + 23536 0.77 0.045691
Target:  5'- gGCGGCGCacgcgGUCGAUGGCCUCgGCCGa- -3'
miRNA:   3'- aCGUCGCG-----CGGCUACCGGAG-CGGUga -5'
26742 3' -62 NC_005808.1 + 8915 0.78 0.040012
Target:  5'- gGCGGCGCGCuCGAUGGCUucgggcguggacaguUCGCCGa- -3'
miRNA:   3'- aCGUCGCGCG-GCUACCGG---------------AGCGGUga -5'
26742 3' -62 NC_005808.1 + 10404 1.07 0.000206
Target:  5'- aUGCAGCGCGCCGAUGGCCUCGCCACUu -3'
miRNA:   3'- -ACGUCGCGCGGCUACCGGAGCGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.