miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26742 5' -53.5 NC_005808.1 + 408 0.66 0.727867
Target:  5'- aCCAGCAGCacGGCGGUgaucgucGGcCGUaCCUUGu -3'
miRNA:   3'- -GGUUGUCGaaCCGUUA-------CC-GCG-GGAAC- -5'
26742 5' -53.5 NC_005808.1 + 17413 0.66 0.727867
Target:  5'- uUCAGCGGCgcccacgucgcccUUGaGCAGUGGC-CCCg-- -3'
miRNA:   3'- -GGUUGUCG-------------AAC-CGUUACCGcGGGaac -5'
26742 5' -53.5 NC_005808.1 + 24545 0.66 0.717885
Target:  5'- aCCGcguggucgcGCAGCgcGGCGAUGGCGaggCCg-- -3'
miRNA:   3'- -GGU---------UGUCGaaCCGUUACCGCg--GGaac -5'
26742 5' -53.5 NC_005808.1 + 30928 0.66 0.717885
Target:  5'- uCUGACAcCUUGGCAGUGGUGUUUc-- -3'
miRNA:   3'- -GGUUGUcGAACCGUUACCGCGGGaac -5'
26742 5' -53.5 NC_005808.1 + 42188 0.66 0.695451
Target:  5'- gCCGACGaucaccgccguGCUgcUGGUg--GGCGCCCUg- -3'
miRNA:   3'- -GGUUGU-----------CGA--ACCGuuaCCGCGGGAac -5'
26742 5' -53.5 NC_005808.1 + 8603 0.66 0.695451
Target:  5'- aCCGugGGgaUGGCGuaggcGUGGCcgguacGCCCUUc -3'
miRNA:   3'- -GGUugUCgaACCGU-----UACCG------CGGGAAc -5'
26742 5' -53.5 NC_005808.1 + 5107 0.67 0.672749
Target:  5'- cCCAGCguccGGUgcGGC--UGGCGCCgUUGa -3'
miRNA:   3'- -GGUUG----UCGaaCCGuuACCGCGGgAAC- -5'
26742 5' -53.5 NC_005808.1 + 39748 0.67 0.672749
Target:  5'- gCCAacgcuACGGCUUGGCg--GGCugGCCUUUc -3'
miRNA:   3'- -GGU-----UGUCGAACCGuuaCCG--CGGGAAc -5'
26742 5' -53.5 NC_005808.1 + 28147 0.67 0.649881
Target:  5'- gCAGCAGCUUGcCGGUGGUcagaucgaccacGCCgUUGc -3'
miRNA:   3'- gGUUGUCGAACcGUUACCG------------CGGgAAC- -5'
26742 5' -53.5 NC_005808.1 + 21140 0.67 0.649881
Target:  5'- ---cCAGCUUGGCcgccGUGuccGCGCCCUg- -3'
miRNA:   3'- gguuGUCGAACCGu---UAC---CGCGGGAac -5'
26742 5' -53.5 NC_005808.1 + 7951 0.67 0.638415
Target:  5'- uCCGACAGCUugcccgUGGCcucGGCGCgCa-- -3'
miRNA:   3'- -GGUUGUCGA------ACCGuuaCCGCGgGaac -5'
26742 5' -53.5 NC_005808.1 + 22869 0.67 0.638415
Target:  5'- aCCAGCccaAGCagGGCGAUgcgcGGCGCCuCUa- -3'
miRNA:   3'- -GGUUG---UCGaaCCGUUA----CCGCGG-GAac -5'
26742 5' -53.5 NC_005808.1 + 6738 0.67 0.638415
Target:  5'- --cACGGCgucGGCcuUGGCGCCCc-- -3'
miRNA:   3'- gguUGUCGaa-CCGuuACCGCGGGaac -5'
26742 5' -53.5 NC_005808.1 + 29754 0.67 0.626942
Target:  5'- aCCAACAGCccGGaCGAguUGGCGCgCa-- -3'
miRNA:   3'- -GGUUGUCGaaCC-GUU--ACCGCGgGaac -5'
26742 5' -53.5 NC_005808.1 + 7990 0.67 0.626942
Target:  5'- gCAGCAGCaccacGGCGucggacGUGCCCUUGg -3'
miRNA:   3'- gGUUGUCGaa---CCGUuac---CGCGGGAAC- -5'
26742 5' -53.5 NC_005808.1 + 327 0.67 0.626942
Target:  5'- aCCGucaGGC-UGGCGGUGGCGUCg--- -3'
miRNA:   3'- -GGUug-UCGaACCGUUACCGCGGgaac -5'
26742 5' -53.5 NC_005808.1 + 13729 0.67 0.626942
Target:  5'- gCCAGCAGCgaggacgUGGCGc-GGCGCUg--- -3'
miRNA:   3'- -GGUUGUCGa------ACCGUuaCCGCGGgaac -5'
26742 5' -53.5 NC_005808.1 + 21872 0.68 0.615475
Target:  5'- gCCAGCAGCaugucGGCcugauggGGUGCCCg-- -3'
miRNA:   3'- -GGUUGUCGaa---CCGuua----CCGCGGGaac -5'
26742 5' -53.5 NC_005808.1 + 9407 0.68 0.604023
Target:  5'- gCCAGCGGUggccgUGcCGAgGGCGCCCa-- -3'
miRNA:   3'- -GGUUGUCGa----ACcGUUaCCGCGGGaac -5'
26742 5' -53.5 NC_005808.1 + 26017 0.68 0.604023
Target:  5'- uUCGAgGGCUUccucGGCGAUGGCaucaaaGCCCg-- -3'
miRNA:   3'- -GGUUgUCGAA----CCGUUACCG------CGGGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.