Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26743 | 3' | -51.8 | NC_005808.1 | + | 19918 | 0.67 | 0.763095 |
Target: 5'- uCGCGcUGGgGGC-AACUGCgcacCGAGCGc -3' miRNA: 3'- -GCGUaACCgCUGcUUGACGa---GCUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 26377 | 0.68 | 0.730743 |
Target: 5'- uGCAaucGCGcccuUGGACUGCUCGAACu -3' miRNA: 3'- gCGUaacCGCu---GCUUGACGAGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 11011 | 0.68 | 0.71973 |
Target: 5'- gCGUAUUGGCGuCGAugaacaccuGCUGCacCGGGCc -3' miRNA: 3'- -GCGUAACCGCuGCU---------UGACGa-GCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 26839 | 0.69 | 0.686181 |
Target: 5'- uCGCAccaUUGGCGgcaACGAGgUGCgguaugUCGAGCGc -3' miRNA: 3'- -GCGU---AACCGC---UGCUUgACG------AGCUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 37343 | 0.69 | 0.679401 |
Target: 5'- aCGCAUUGcCGAccccgaccugccggcCGAACUGCgCGAACu -3' miRNA: 3'- -GCGUAACcGCU---------------GCUUGACGaGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 5468 | 0.69 | 0.67487 |
Target: 5'- cCGCcg-GGCGGCGAGgUGUUgcCGAugGg -3' miRNA: 3'- -GCGuaaCCGCUGCUUgACGA--GCUugC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 29285 | 0.69 | 0.65213 |
Target: 5'- aCGUGguaGGCGACGAACUGCUgGc--- -3' miRNA: 3'- -GCGUaa-CCGCUGCUUGACGAgCuugc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 8530 | 0.7 | 0.62931 |
Target: 5'- gGCGUaGGCGAUGAAacGCUCGAcagccGCGc -3' miRNA: 3'- gCGUAaCCGCUGCUUgaCGAGCU-----UGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 9898 | 0.7 | 0.617899 |
Target: 5'- gCGCG-UGGCGAuguCGAGCUGCacuUCGAGg- -3' miRNA: 3'- -GCGUaACCGCU---GCUUGACG---AGCUUgc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 2732 | 0.7 | 0.617899 |
Target: 5'- aCGC-UUGaGCG-CGGcccggcGCUGCUCGGGCGu -3' miRNA: 3'- -GCGuAAC-CGCuGCU------UGACGAGCUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 15390 | 0.7 | 0.595127 |
Target: 5'- cCGCGUgcgGGcCGGCGAAgaUGC-CGGACGa -3' miRNA: 3'- -GCGUAa--CC-GCUGCUUg-ACGaGCUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 17738 | 0.71 | 0.583786 |
Target: 5'- gCGCAuUUGGUGGCGAaaccccagguguGCaGUUCGAGCa -3' miRNA: 3'- -GCGU-AACCGCUGCU------------UGaCGAGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 11355 | 0.71 | 0.572489 |
Target: 5'- uGCAguacGGUGGCGAcCUGCUCGccCGg -3' miRNA: 3'- gCGUaa--CCGCUGCUuGACGAGCuuGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 27836 | 0.71 | 0.571362 |
Target: 5'- cCGCggUGGCGcCGGccgcgccGCUGCUCaaGAACGu -3' miRNA: 3'- -GCGuaACCGCuGCU-------UGACGAG--CUUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 13024 | 0.71 | 0.561244 |
Target: 5'- gCGCAgUGGCGACGGccucgucaucGCguUGCUUGAguGCGg -3' miRNA: 3'- -GCGUaACCGCUGCU----------UG--ACGAGCU--UGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 17530 | 0.71 | 0.550061 |
Target: 5'- gCGCug-GGUGGCGAuGCUGCcCGAugGu -3' miRNA: 3'- -GCGuaaCCGCUGCU-UGACGaGCUugC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 31452 | 0.72 | 0.526812 |
Target: 5'- gCGCA--GGCGGCccagcagcaggccGAACUGCUCGcACGu -3' miRNA: 3'- -GCGUaaCCGCUG-------------CUUGACGAGCuUGC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 6747 | 0.72 | 0.478344 |
Target: 5'- gGCcUUGGCGccccacuuuuccuugGCGAcCUGCUCGAugGc -3' miRNA: 3'- gCGuAACCGC---------------UGCUuGACGAGCUugC- -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 24831 | 0.72 | 0.47414 |
Target: 5'- uCGCGc--GCGACucGCUGCUCGAACu -3' miRNA: 3'- -GCGUaacCGCUGcuUGACGAGCUUGc -5' |
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26743 | 3' | -51.8 | NC_005808.1 | + | 9902 | 0.76 | 0.307655 |
Target: 5'- uGCAcgcGGCGagcacgucgGCGAACUGCUCGGGCu -3' miRNA: 3'- gCGUaa-CCGC---------UGCUUGACGAGCUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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