miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26744 3' -53.2 NC_005808.1 + 1463 0.66 0.778424
Target:  5'- gGCGCGGUCggCGGCcuccuGGCAGgccGGGGUa- -3'
miRNA:   3'- -UGUGCUAGuaGUUG-----CCGUC---UCCCAgc -5'
26744 3' -53.2 NC_005808.1 + 15233 1.1 0.001075
Target:  5'- gACACGAUCAUCAACGGCAGAGGGUCGg -3'
miRNA:   3'- -UGUGCUAGUAGUUGCCGUCUCCCAGC- -5'
26744 3' -53.2 NC_005808.1 + 17816 0.69 0.58353
Target:  5'- aACGCGggCAUCGAggacgacccgUGGCAGGucauuccgacagcauGGGUCGa -3'
miRNA:   3'- -UGUGCuaGUAGUU----------GCCGUCU---------------CCCAGC- -5'
26744 3' -53.2 NC_005808.1 + 19237 0.71 0.480857
Target:  5'- gGCACGccaccguguUCAUCGGCGGC-GAGGccGUCGa -3'
miRNA:   3'- -UGUGCu--------AGUAGUUGCCGuCUCC--CAGC- -5'
26744 3' -53.2 NC_005808.1 + 19332 0.67 0.703136
Target:  5'- gGCGCGGUCuUCGgacaggcgccagGCGGCGGAauugccguuGaGGUCGg -3'
miRNA:   3'- -UGUGCUAGuAGU------------UGCCGUCU---------C-CCAGC- -5'
26744 3' -53.2 NC_005808.1 + 26295 0.68 0.646897
Target:  5'- cGCGCGAUggaugcCAUCAACGGaCAGGcacGGUCu -3'
miRNA:   3'- -UGUGCUA------GUAGUUGCC-GUCUc--CCAGc -5'
26744 3' -53.2 NC_005808.1 + 30156 0.68 0.669517
Target:  5'- cGCGuCGGaCAUCAGCGGCAGuuGGcgccaGUCGg -3'
miRNA:   3'- -UGU-GCUaGUAGUUGCCGUCu-CC-----CAGC- -5'
26744 3' -53.2 NC_005808.1 + 34550 0.66 0.778424
Target:  5'- gGCGCGcGUCAUgGACGGCGGcaAGGacggCGg -3'
miRNA:   3'- -UGUGC-UAGUAgUUGCCGUC--UCCca--GC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.