Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26745 | 3' | -56 | NC_005808.1 | + | 22881 | 0.67 | 0.479887 |
Target: 5'- aGGgCGAUGCGCgGCGCcuCUauGCAGCUUc -3' miRNA: 3'- -CUgGCUACGUG-CGCGuuGG--UGUCGAA- -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 9675 | 0.67 | 0.479887 |
Target: 5'- uGGCCGAacagccagccgUGCAgGcCGUGGCCGCAGUUc -3' miRNA: 3'- -CUGGCU-----------ACGUgC-GCGUUGGUGUCGAa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 23176 | 0.67 | 0.479887 |
Target: 5'- cGGCCcccUGCugGUGCGACaGCAGCa- -3' miRNA: 3'- -CUGGcu-ACGugCGCGUUGgUGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 20856 | 0.67 | 0.479887 |
Target: 5'- uGACCGAcugcacgacgGCGCGCGCcgugauuucGACCACGGa-- -3' miRNA: 3'- -CUGGCUa---------CGUGCGCG---------UUGGUGUCgaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 34262 | 0.67 | 0.490469 |
Target: 5'- uGGCaUGAgcacGCACGCGCAACUuuccccgaGCAGCg- -3' miRNA: 3'- -CUG-GCUa---CGUGCGCGUUGG--------UGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 35506 | 0.67 | 0.490469 |
Target: 5'- cGugCGcGUGgGCGCGCcguggguaGGCCGCGGCg- -3' miRNA: 3'- -CugGC-UACgUGCGCG--------UUGGUGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 32727 | 0.67 | 0.501159 |
Target: 5'- uGGCCGAgaaGCAgCGCGCcgguGCCAC-GCUc -3' miRNA: 3'- -CUGGCUa--CGU-GCGCGu---UGGUGuCGAa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 9780 | 0.66 | 0.508703 |
Target: 5'- cGGCUGGUGUaguccgaccggcagACGCGCAGCaC-CAGCg- -3' miRNA: 3'- -CUGGCUACG--------------UGCGCGUUG-GuGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 34543 | 0.66 | 0.51195 |
Target: 5'- cGACCuggGCGCGCGUcaugGACgGCGGCa- -3' miRNA: 3'- -CUGGcuaCGUGCGCG----UUGgUGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 8296 | 0.66 | 0.51195 |
Target: 5'- uGCCGggGCA-GUGCAGCCAgCGGUg- -3' miRNA: 3'- cUGGCuaCGUgCGCGUUGGU-GUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 3740 | 0.66 | 0.522836 |
Target: 5'- cGCCGGUgguggGCACGuCGguGCCGCcGCUg -3' miRNA: 3'- cUGGCUA-----CGUGC-GCguUGGUGuCGAa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 391 | 0.66 | 0.522836 |
Target: 5'- uGAgCGcgGCcaGCGCGCGACUguugaGCAGCa- -3' miRNA: 3'- -CUgGCuaCG--UGCGCGUUGG-----UGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 34495 | 0.66 | 0.522836 |
Target: 5'- uGGCCGA-GCACGUGCAgaaguacaucgACUACGuGCg- -3' miRNA: 3'- -CUGGCUaCGUGCGCGU-----------UGGUGU-CGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 14770 | 0.66 | 0.526119 |
Target: 5'- cGGCCGGcgccaccgcgggcaGCGCGCGCGaggacguGCUGCGGCUg -3' miRNA: 3'- -CUGGCUa-------------CGUGCGCGU-------UGGUGUCGAa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 23425 | 0.66 | 0.53381 |
Target: 5'- cGCCGGcgGCACGgGCAGCgACAacGCa- -3' miRNA: 3'- cUGGCUa-CGUGCgCGUUGgUGU--CGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 31429 | 0.66 | 0.53381 |
Target: 5'- cGGCCGAccagcGCACGCaacgugcgcagGCGGCCcaGCAGCa- -3' miRNA: 3'- -CUGGCUa----CGUGCG-----------CGUUGG--UGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 14902 | 0.66 | 0.54154 |
Target: 5'- aGCCGcUGCcgGCGCGCGgccuguauuccaagACCACGGUg- -3' miRNA: 3'- cUGGCuACG--UGCGCGU--------------UGGUGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 19145 | 0.66 | 0.544865 |
Target: 5'- cGCCGGcgUGUACGCGCgAACCAUccGCa- -3' miRNA: 3'- cUGGCU--ACGUGCGCG-UUGGUGu-CGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 18051 | 0.66 | 0.544865 |
Target: 5'- cAUCGccGCGCuGCGCGACCAC-GCg- -3' miRNA: 3'- cUGGCuaCGUG-CGCGUUGGUGuCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 32922 | 0.66 | 0.549307 |
Target: 5'- cGGCC--UGCACgGCggcuguucggccaggGCGACCACGGCUg -3' miRNA: 3'- -CUGGcuACGUG-CG---------------CGUUGGUGUCGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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