miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26745 3' -56 NC_005808.1 + 25298 0.68 0.399675
Target:  5'- uGCCGGaaUGgAUGCGCGcCCGCGGCg- -3'
miRNA:   3'- cUGGCU--ACgUGCGCGUuGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 26250 0.66 0.555992
Target:  5'- cGCCGAagGCACGgGCAcCCGcCGGCc- -3'
miRNA:   3'- cUGGCUa-CGUGCgCGUuGGU-GUCGaa -5'
26745 3' -56 NC_005808.1 + 27005 0.75 0.145589
Target:  5'- uGGCCGAUgGCGCgGUGCAuCCGCAGCg- -3'
miRNA:   3'- -CUGGCUA-CGUG-CGCGUuGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 27787 0.72 0.253429
Target:  5'- uACaCGAaGCGCGCGCcgcgcAGCCGCAGCa- -3'
miRNA:   3'- cUG-GCUaCGUGCGCG-----UUGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 31429 0.66 0.53381
Target:  5'- cGGCCGAccagcGCACGCaacgugcgcagGCGGCCcaGCAGCa- -3'
miRNA:   3'- -CUGGCUa----CGUGCG-----------CGUUGG--UGUCGaa -5'
26745 3' -56 NC_005808.1 + 31508 0.66 0.566063
Target:  5'- aGCCGAcaaggUGCucGCGCGCGACCcggacacguucgaGCAGUUc -3'
miRNA:   3'- cUGGCU-----ACG--UGCGCGUUGG-------------UGUCGAa -5'
26745 3' -56 NC_005808.1 + 32126 0.7 0.304411
Target:  5'- gGGCCGGUGC-UGCGCGAcuuCCAgGGCg- -3'
miRNA:   3'- -CUGGCUACGuGCGCGUU---GGUgUCGaa -5'
26745 3' -56 NC_005808.1 + 32727 0.67 0.501159
Target:  5'- uGGCCGAgaaGCAgCGCGCcgguGCCAC-GCUc -3'
miRNA:   3'- -CUGGCUa--CGU-GCGCGu---UGGUGuCGAa -5'
26745 3' -56 NC_005808.1 + 32922 0.66 0.549307
Target:  5'- cGGCC--UGCACgGCggcuguucggccaggGCGACCACGGCUg -3'
miRNA:   3'- -CUGGcuACGUG-CG---------------CGUUGGUGUCGAa -5'
26745 3' -56 NC_005808.1 + 33749 0.68 0.428764
Target:  5'- cGACCGAgGCcaACGCGCuGGCCcgcguuGCGGCUg -3'
miRNA:   3'- -CUGGCUaCG--UGCGCG-UUGG------UGUCGAa -5'
26745 3' -56 NC_005808.1 + 33923 0.68 0.448836
Target:  5'- cACCuggGCGCGCaGCAGCCGCuGCa- -3'
miRNA:   3'- cUGGcuaCGUGCG-CGUUGGUGuCGaa -5'
26745 3' -56 NC_005808.1 + 34262 0.67 0.490469
Target:  5'- uGGCaUGAgcacGCACGCGCAACUuuccccgaGCAGCg- -3'
miRNA:   3'- -CUG-GCUa---CGUGCGCGUUGG--------UGUCGaa -5'
26745 3' -56 NC_005808.1 + 34435 0.69 0.36291
Target:  5'- -uCCGGgcGCACGCGCAGggaCGCAGCg- -3'
miRNA:   3'- cuGGCUa-CGUGCGCGUUg--GUGUCGaa -5'
26745 3' -56 NC_005808.1 + 34495 0.66 0.522836
Target:  5'- uGGCCGA-GCACGUGCAgaaguacaucgACUACGuGCg- -3'
miRNA:   3'- -CUGGCUaCGUGCGCGU-----------UGGUGU-CGaa -5'
26745 3' -56 NC_005808.1 + 34543 0.66 0.51195
Target:  5'- cGACCuggGCGCGCGUcaugGACgGCGGCa- -3'
miRNA:   3'- -CUGGcuaCGUGCGCG----UUGgUGUCGaa -5'
26745 3' -56 NC_005808.1 + 34987 0.68 0.438735
Target:  5'- -uCCGgcGC-UGCGCGACCACGuGCUg -3'
miRNA:   3'- cuGGCuaCGuGCGCGUUGGUGU-CGAa -5'
26745 3' -56 NC_005808.1 + 35506 0.67 0.490469
Target:  5'- cGugCGcGUGgGCGCGCcguggguaGGCCGCGGCg- -3'
miRNA:   3'- -CugGC-UACgUGCGCG--------UUGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 37962 0.68 0.448836
Target:  5'- uGGCCGAcGCA-GCGUGGCC-CAGCa- -3'
miRNA:   3'- -CUGGCUaCGUgCGCGUUGGuGUCGaa -5'
26745 3' -56 NC_005808.1 + 38836 0.66 0.555992
Target:  5'- cGACCGAgGCuACGUcCAGCgGCGGCa- -3'
miRNA:   3'- -CUGGCUaCG-UGCGcGUUGgUGUCGaa -5'
26745 3' -56 NC_005808.1 + 39029 0.7 0.345428
Target:  5'- gGAUCGGUGUACGCcCAGCCcGCuGCUg -3'
miRNA:   3'- -CUGGCUACGUGCGcGUUGG-UGuCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.