miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26745 3' -56 NC_005808.1 + 34543 0.66 0.51195
Target:  5'- cGACCuggGCGCGCGUcaugGACgGCGGCa- -3'
miRNA:   3'- -CUGGcuaCGUGCGCG----UUGgUGUCGaa -5'
26745 3' -56 NC_005808.1 + 33749 0.68 0.428764
Target:  5'- cGACCGAgGCcaACGCGCuGGCCcgcguuGCGGCUg -3'
miRNA:   3'- -CUGGCUaCG--UGCGCG-UUGG------UGUCGAa -5'
26745 3' -56 NC_005808.1 + 14032 0.68 0.409232
Target:  5'- uGGCCGAcgUGCGCGcCGCGaugGCCgGCGGCc- -3'
miRNA:   3'- -CUGGCU--ACGUGC-GCGU---UGG-UGUCGaa -5'
26745 3' -56 NC_005808.1 + 25161 0.74 0.182551
Target:  5'- -cUCGAUGCugGCGgGGCCACuGCUc -3'
miRNA:   3'- cuGGCUACGugCGCgUUGGUGuCGAa -5'
26745 3' -56 NC_005808.1 + 10234 0.73 0.209679
Target:  5'- cGGCCGggGCcucgGCG-GCGACCGCAGCg- -3'
miRNA:   3'- -CUGGCuaCG----UGCgCGUUGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 41488 0.72 0.253429
Target:  5'- gGGCCGAUGCGCgacaugccGCGCGA-CACGGCc- -3'
miRNA:   3'- -CUGGCUACGUG--------CGCGUUgGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 4497 0.71 0.281649
Target:  5'- cGCCgGAUGCGCGCGgcGCCACAggcGCUUg -3'
miRNA:   3'- cUGG-CUACGUGCGCguUGGUGU---CGAA- -5'
26745 3' -56 NC_005808.1 + 32126 0.7 0.304411
Target:  5'- gGGCCGGUGC-UGCGCGAcuuCCAgGGCg- -3'
miRNA:   3'- -CUGGCUACGuGCGCGUU---GGUgUCGaa -5'
26745 3' -56 NC_005808.1 + 13479 0.7 0.312305
Target:  5'- cGGCCuc-GCGCGCGUGACCgGCAGCa- -3'
miRNA:   3'- -CUGGcuaCGUGCGCGUUGG-UGUCGaa -5'
26745 3' -56 NC_005808.1 + 24995 0.7 0.336916
Target:  5'- aGGCCGGUaucGacaACGCGCAGCCGuuUAGCUg -3'
miRNA:   3'- -CUGGCUA---Cg--UGCGCGUUGGU--GUCGAa -5'
26745 3' -56 NC_005808.1 + 39029 0.7 0.345428
Target:  5'- gGAUCGGUGUACGCcCAGCCcGCuGCUg -3'
miRNA:   3'- -CUGGCUACGUGCGcGUUGG-UGuCGAa -5'
26745 3' -56 NC_005808.1 + 21814 0.7 0.345428
Target:  5'- cACCGAcaUGgACGUGCAGCCGC-GCg- -3'
miRNA:   3'- cUGGCU--ACgUGCGCGUUGGUGuCGaa -5'
26745 3' -56 NC_005808.1 + 34435 0.69 0.36291
Target:  5'- -uCCGGgcGCACGCGCAGggaCGCAGCg- -3'
miRNA:   3'- cuGGCUa-CGUGCGCGUUg--GUGUCGaa -5'
26745 3' -56 NC_005808.1 + 12382 0.69 0.36291
Target:  5'- cGCCGAgugcgUGCGCGUGCucaAGCCcgGCGGCUa -3'
miRNA:   3'- cUGGCU-----ACGUGCGCG---UUGG--UGUCGAa -5'
26745 3' -56 NC_005808.1 + 23514 0.69 0.36291
Target:  5'- aGGCCGGccUGCAauCGCGUGACCuCGGCg- -3'
miRNA:   3'- -CUGGCU--ACGU--GCGCGUUGGuGUCGaa -5'
26745 3' -56 NC_005808.1 + 41244 0.69 0.36291
Target:  5'- cGCCgGAUGCGCaaggcCGcCGACCACGGCUUc -3'
miRNA:   3'- cUGG-CUACGUGc----GC-GUUGGUGUCGAA- -5'
26745 3' -56 NC_005808.1 + 18880 0.68 0.399675
Target:  5'- cACCGAgGCACuggccCGCGACCugGGCg- -3'
miRNA:   3'- cUGGCUaCGUGc----GCGUUGGugUCGaa -5'
26745 3' -56 NC_005808.1 + 25298 0.68 0.399675
Target:  5'- uGCCGGaaUGgAUGCGCGcCCGCGGCg- -3'
miRNA:   3'- cUGGCU--ACgUGCGCGUuGGUGUCGaa -5'
26745 3' -56 NC_005808.1 + 4205 0.68 0.399675
Target:  5'- uGGCCGcgaGCACGuCGCGGCUuGCGGCUUg -3'
miRNA:   3'- -CUGGCua-CGUGC-GCGUUGG-UGUCGAA- -5'
26745 3' -56 NC_005808.1 + 4363 0.68 0.409232
Target:  5'- cGGCCGGacgGCAgGCGgAugCGCAGCc- -3'
miRNA:   3'- -CUGGCUa--CGUgCGCgUugGUGUCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.