Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26745 | 3' | -56 | NC_005808.1 | + | 35506 | 0.67 | 0.490469 |
Target: 5'- cGugCGcGUGgGCGCGCcguggguaGGCCGCGGCg- -3' miRNA: 3'- -CugGC-UACgUGCGCG--------UUGGUGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 34262 | 0.67 | 0.490469 |
Target: 5'- uGGCaUGAgcacGCACGCGCAACUuuccccgaGCAGCg- -3' miRNA: 3'- -CUG-GCUa---CGUGCGCGUUGG--------UGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 23176 | 0.67 | 0.479887 |
Target: 5'- cGGCCcccUGCugGUGCGACaGCAGCa- -3' miRNA: 3'- -CUGGcu-ACGugCGCGUUGgUGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 22881 | 0.67 | 0.479887 |
Target: 5'- aGGgCGAUGCGCgGCGCcuCUauGCAGCUUc -3' miRNA: 3'- -CUgGCUACGUG-CGCGuuGG--UGUCGAA- -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 9675 | 0.67 | 0.479887 |
Target: 5'- uGGCCGAacagccagccgUGCAgGcCGUGGCCGCAGUUc -3' miRNA: 3'- -CUGGCU-----------ACGUgC-GCGUUGGUGUCGAa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 20856 | 0.67 | 0.479887 |
Target: 5'- uGACCGAcugcacgacgGCGCGCGCcgugauuucGACCACGGa-- -3' miRNA: 3'- -CUGGCUa---------CGUGCGCG---------UUGGUGUCgaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 40249 | 0.67 | 0.459065 |
Target: 5'- aGGCCGAauugcggcGCACGCGC-GCCAC-GCa- -3' miRNA: 3'- -CUGGCUa-------CGUGCGCGuUGGUGuCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 33923 | 0.68 | 0.448836 |
Target: 5'- cACCuggGCGCGCaGCAGCCGCuGCa- -3' miRNA: 3'- cUGGcuaCGUGCG-CGUUGGUGuCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 37962 | 0.68 | 0.448836 |
Target: 5'- uGGCCGAcGCA-GCGUGGCC-CAGCa- -3' miRNA: 3'- -CUGGCUaCGUgCGCGUUGGuGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 7255 | 0.68 | 0.448836 |
Target: 5'- gGGCCGAUGU-CGC-CGGCCuuguGCAGCUUc -3' miRNA: 3'- -CUGGCUACGuGCGcGUUGG----UGUCGAA- -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 16255 | 0.68 | 0.448836 |
Target: 5'- uGGCgGAUGgcguuggccuCGCGCGCGGCCACccggaaGGCUa -3' miRNA: 3'- -CUGgCUAC----------GUGCGCGUUGGUG------UCGAa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 939 | 0.68 | 0.447821 |
Target: 5'- gGGCCGAucUGUccguccuGCGCGguGCCcacgGCAGCUUg -3' miRNA: 3'- -CUGGCU--ACG-------UGCGCguUGG----UGUCGAA- -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 23752 | 0.68 | 0.447821 |
Target: 5'- gGGCCGcccggccuucuacAUGC-CGCGCAAaauUCGCAGCUUc -3' miRNA: 3'- -CUGGC-------------UACGuGCGCGUU---GGUGUCGAA- -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 34987 | 0.68 | 0.438735 |
Target: 5'- -uCCGgcGC-UGCGCGACCACGuGCUg -3' miRNA: 3'- cuGGCuaCGuGCGCGUUGGUGU-CGAa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 819 | 0.68 | 0.438735 |
Target: 5'- uGGCUGGgcuugaGCGCGCGCAGagACAGCg- -3' miRNA: 3'- -CUGGCUa-----CGUGCGCGUUggUGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 33749 | 0.68 | 0.428764 |
Target: 5'- cGACCGAgGCcaACGCGCuGGCCcgcguuGCGGCUg -3' miRNA: 3'- -CUGGCUaCG--UGCGCG-UUGG------UGUCGAa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 14032 | 0.68 | 0.409232 |
Target: 5'- uGGCCGAcgUGCGCGcCGCGaugGCCgGCGGCc- -3' miRNA: 3'- -CUGGCU--ACGUGC-GCGU---UGG-UGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 4363 | 0.68 | 0.409232 |
Target: 5'- cGGCCGGacgGCAgGCGgAugCGCAGCc- -3' miRNA: 3'- -CUGGCUa--CGUgCGCgUugGUGUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 18880 | 0.68 | 0.399675 |
Target: 5'- cACCGAgGCACuggccCGCGACCugGGCg- -3' miRNA: 3'- cUGGCUaCGUGc----GCGUUGGugUCGaa -5' |
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26745 | 3' | -56 | NC_005808.1 | + | 25298 | 0.68 | 0.399675 |
Target: 5'- uGCCGGaaUGgAUGCGCGcCCGCGGCg- -3' miRNA: 3'- cUGGCU--ACgUGCGCGUuGGUGUCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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