miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26745 5' -54.5 NC_005808.1 + 274 0.68 0.528353
Target:  5'- uGAGGCacGgCGUCCAGUaGCugCGCCg -3'
miRNA:   3'- gCUUCGa-CgGCAGGUCAaCGuaGCGG- -5'
26745 5' -54.5 NC_005808.1 + 322 0.7 0.464888
Target:  5'- -aGGGCgUGCCGUaCCGGggGUcgUGCCa -3'
miRNA:   3'- gcUUCG-ACGGCA-GGUCaaCGuaGCGG- -5'
26745 5' -54.5 NC_005808.1 + 448 0.66 0.662313
Target:  5'- -uGGGCUGCUGcgcggCCAGcUUGCGggCGCUg -3'
miRNA:   3'- gcUUCGACGGCa----GGUC-AACGUa-GCGG- -5'
26745 5' -54.5 NC_005808.1 + 2448 0.68 0.561286
Target:  5'- cCGAAaCUGCgGcCCAGgcGC-UCGCCu -3'
miRNA:   3'- -GCUUcGACGgCaGGUCaaCGuAGCGG- -5'
26745 5' -54.5 NC_005808.1 + 3932 0.68 0.527268
Target:  5'- ---cGCUGCCGUCCGcgauggucacGUUGUAUuugcuggUGCCa -3'
miRNA:   3'- gcuuCGACGGCAGGU----------CAACGUA-------GCGG- -5'
26745 5' -54.5 NC_005808.1 + 4314 0.66 0.673533
Target:  5'- gGAcAGCUuGCCGgcgucaUCCAGUUGCGg-GCUg -3'
miRNA:   3'- gCU-UCGA-CGGC------AGGUCAACGUagCGG- -5'
26745 5' -54.5 NC_005808.1 + 6200 0.66 0.673533
Target:  5'- cCGAAGCcgauaGCCG-CCGGguucUGCGUuuUGCCu -3'
miRNA:   3'- -GCUUCGa----CGGCaGGUCa---ACGUA--GCGG- -5'
26745 5' -54.5 NC_005808.1 + 6661 0.69 0.506799
Target:  5'- cCGggGaaGCCGUCgUAGUUgGCcuugagGUCGCCa -3'
miRNA:   3'- -GCuuCgaCGGCAG-GUCAA-CG------UAGCGG- -5'
26745 5' -54.5 NC_005808.1 + 9094 0.67 0.605989
Target:  5'- gGccGCgagGCCGUucuugCCGGUgggcagGUAUCGCCa -3'
miRNA:   3'- gCuuCGa--CGGCA-----GGUCAa-----CGUAGCGG- -5'
26745 5' -54.5 NC_005808.1 + 10070 0.66 0.651063
Target:  5'- cCGAGGC-GUCGUCgGGgcgaGCcgUGCCa -3'
miRNA:   3'- -GCUUCGaCGGCAGgUCaa--CGuaGCGG- -5'
26745 5' -54.5 NC_005808.1 + 10671 0.66 0.695839
Target:  5'- ---cGCcGCCGugUCCAGUUGCGUCu-- -3'
miRNA:   3'- gcuuCGaCGGC--AGGUCAACGUAGcgg -5'
26745 5' -54.5 NC_005808.1 + 11575 0.69 0.506799
Target:  5'- uCGAAGCcaUGCCGcCCAGggccgccgGCuggcCGCCg -3'
miRNA:   3'- -GCUUCG--ACGGCaGGUCaa------CGua--GCGG- -5'
26745 5' -54.5 NC_005808.1 + 12637 0.71 0.396214
Target:  5'- uCGcuGCUGCCGUCCuuuGgcgucggGuCGUCGCCc -3'
miRNA:   3'- -GCuuCGACGGCAGGu--Caa-----C-GUAGCGG- -5'
26745 5' -54.5 NC_005808.1 + 13121 0.66 0.706901
Target:  5'- -cGGGUUGCCGgCCAGgcgUGgGUCGUUc -3'
miRNA:   3'- gcUUCGACGGCaGGUCa--ACgUAGCGG- -5'
26745 5' -54.5 NC_005808.1 + 14023 0.66 0.662313
Target:  5'- ---cGCUGCCGguggCCGacgUGCG-CGCCg -3'
miRNA:   3'- gcuuCGACGGCa---GGUca-ACGUaGCGG- -5'
26745 5' -54.5 NC_005808.1 + 14083 0.69 0.485628
Target:  5'- -uAGGgUGCCagaaauuucGUCCAGUUGCuucuugagguuAUCGCCg -3'
miRNA:   3'- gcUUCgACGG---------CAGGUCAACG-----------UAGCGG- -5'
26745 5' -54.5 NC_005808.1 + 14971 0.68 0.539258
Target:  5'- uGAAGUcGCCGgucgCCAGaaugGCGUCGgCa -3'
miRNA:   3'- gCUUCGaCGGCa---GGUCaa--CGUAGCgG- -5'
26745 5' -54.5 NC_005808.1 + 15251 0.66 0.706901
Target:  5'- aGAGGgucggcCUGCCGcacaaaCAGUUGCccgcuGUCGCCc -3'
miRNA:   3'- gCUUC------GACGGCag----GUCAACG-----UAGCGG- -5'
26745 5' -54.5 NC_005808.1 + 15470 1.13 0.000438
Target:  5'- cCGAAGCUGCCGUCCAGUUGCAUCGCCa -3'
miRNA:   3'- -GCUUCGACGGCAGGUCAACGUAGCGG- -5'
26745 5' -54.5 NC_005808.1 + 16943 0.68 0.550238
Target:  5'- --cGGC-GCCGUCCAGcaGCGU-GCCg -3'
miRNA:   3'- gcuUCGaCGGCAGGUCaaCGUAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.