Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26745 | 5' | -54.5 | NC_005808.1 | + | 39990 | 0.69 | 0.506799 |
Target: 5'- aCGAAGCUaaaGUCGuUCCGGUUGCAacagggCGgCa -3' miRNA: 3'- -GCUUCGA---CGGC-AGGUCAACGUa-----GCgG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 28018 | 0.69 | 0.517532 |
Target: 5'- gGAAGaaGCCGaUCAuGUcgGCGUCGCCg -3' miRNA: 3'- gCUUCgaCGGCaGGU-CAa-CGUAGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 16943 | 0.68 | 0.550238 |
Target: 5'- --cGGC-GCCGUCCAGcaGCGU-GCCg -3' miRNA: 3'- gcuUCGaCGGCAGGUCaaCGUAgCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 24572 | 0.68 | 0.545838 |
Target: 5'- gCGAGGCcggccacggucggGCCGUCCGGcgUGUccUUGCCg -3' miRNA: 3'- -GCUUCGa------------CGGCAGGUCa-ACGu-AGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 14971 | 0.68 | 0.539258 |
Target: 5'- uGAAGUcGCCGgucgCCAGaaugGCGUCGgCa -3' miRNA: 3'- gCUUCGaCGGCa---GGUCaa--CGUAGCgG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 19711 | 0.68 | 0.528353 |
Target: 5'- gGAAGCUGCauagaGgcgCCGc--GCAUCGCCc -3' miRNA: 3'- gCUUCGACGg----Ca--GGUcaaCGUAGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 3932 | 0.68 | 0.527268 |
Target: 5'- ---cGCUGCCGUCCGcgauggucacGUUGUAUuugcuggUGCCa -3' miRNA: 3'- gcuuCGACGGCAGGU----------CAACGUA-------GCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 4314 | 0.66 | 0.673533 |
Target: 5'- gGAcAGCUuGCCGgcgucaUCCAGUUGCGg-GCUg -3' miRNA: 3'- gCU-UCGA-CGGC------AGGUCAACGUagCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 18936 | 0.66 | 0.662313 |
Target: 5'- cCGAGGgUcGCCugGUgCAGUUGCugcCGCCg -3' miRNA: 3'- -GCUUCgA-CGG--CAgGUCAACGua-GCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 14023 | 0.66 | 0.662313 |
Target: 5'- ---cGCUGCCGguggCCGacgUGCG-CGCCg -3' miRNA: 3'- gcuuCGACGGCa---GGUca-ACGUaGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 2448 | 0.68 | 0.561286 |
Target: 5'- cCGAAaCUGCgGcCCAGgcGC-UCGCCu -3' miRNA: 3'- -GCUUcGACGgCaGGUCaaCGuAGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 18436 | 0.68 | 0.539258 |
Target: 5'- cCGAAGCgcgcaGCCGUCgAGgcGCuggGCCa -3' miRNA: 3'- -GCUUCGa----CGGCAGgUCaaCGuagCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 274 | 0.68 | 0.528353 |
Target: 5'- uGAGGCacGgCGUCCAGUaGCugCGCCg -3' miRNA: 3'- gCUUCGa-CgGCAGGUCAaCGuaGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 35094 | 0.68 | 0.528353 |
Target: 5'- cCGaAAGCgcgcGCCG-CCAGUUGCAagggGCCu -3' miRNA: 3'- -GC-UUCGa---CGGCaGGUCAACGUag--CGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 6661 | 0.69 | 0.506799 |
Target: 5'- cCGggGaaGCCGUCgUAGUUgGCcuugagGUCGCCa -3' miRNA: 3'- -GCuuCgaCGGCAG-GUCAA-CG------UAGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 322 | 0.7 | 0.464888 |
Target: 5'- -aGGGCgUGCCGUaCCGGggGUcgUGCCa -3' miRNA: 3'- gcUUCG-ACGGCA-GGUCaaCGuaGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 23625 | 0.66 | 0.695839 |
Target: 5'- gCGAcuGGCguuacGUCGUCC----GCAUCGCCa -3' miRNA: 3'- -GCU--UCGa----CGGCAGGucaaCGUAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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