miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26746 5' -53.2 NC_005808.1 + 12465 0.66 0.769973
Target:  5'- ---cGGUGC-AgGC-CGGCGGCGUGu -3'
miRNA:   3'- guuaCCACGcUgCGuGCUGCCGUAUc -5'
26746 5' -53.2 NC_005808.1 + 12131 0.66 0.769973
Target:  5'- --uUGGcGCGACGCGCcACGcgcugcgcuuccGCGUAGg -3'
miRNA:   3'- guuACCaCGCUGCGUGcUGC------------CGUAUC- -5'
26746 5' -53.2 NC_005808.1 + 17173 0.66 0.769973
Target:  5'- ----cGUGCaGCGCAUGACGGaaauCAUGGg -3'
miRNA:   3'- guuacCACGcUGCGUGCUGCC----GUAUC- -5'
26746 5' -53.2 NC_005808.1 + 31435 0.66 0.75944
Target:  5'- ------gGCGACGcCACGaucuGCGGCGUGGu -3'
miRNA:   3'- guuaccaCGCUGC-GUGC----UGCCGUAUC- -5'
26746 5' -53.2 NC_005808.1 + 15186 0.66 0.748769
Target:  5'- ---cGGUGCGccagGCGCGCGACGacuacaagagcGaCAUGGa -3'
miRNA:   3'- guuaCCACGC----UGCGUGCUGC-----------C-GUAUC- -5'
26746 5' -53.2 NC_005808.1 + 18322 0.66 0.748768
Target:  5'- ---cGGcaguaGCGGCGCAgcuugGugGGCAUAGg -3'
miRNA:   3'- guuaCCa----CGCUGCGUg----CugCCGUAUC- -5'
26746 5' -53.2 NC_005808.1 + 11197 0.66 0.737969
Target:  5'- uGAUGGUGCGgucaaugccGCGCAUGACcGCc--- -3'
miRNA:   3'- gUUACCACGC---------UGCGUGCUGcCGuauc -5'
26746 5' -53.2 NC_005808.1 + 16746 0.66 0.727057
Target:  5'- -cGUGGcgGUcACGCuCGugGGCGUAGc -3'
miRNA:   3'- guUACCa-CGcUGCGuGCugCCGUAUC- -5'
26746 5' -53.2 NC_005808.1 + 16067 0.66 0.727057
Target:  5'- -cGUGGccGCcGCGCGCGGCGcCGUAGa -3'
miRNA:   3'- guUACCa-CGcUGCGUGCUGCcGUAUC- -5'
26746 5' -53.2 NC_005808.1 + 27628 0.66 0.727057
Target:  5'- aCGAUGG-GCcgGugGUugGuCGGCAUGa -3'
miRNA:   3'- -GUUACCaCG--CugCGugCuGCCGUAUc -5'
26746 5' -53.2 NC_005808.1 + 26533 0.67 0.716044
Target:  5'- ---cGGcGCcGCGCGCGGCGGCc--- -3'
miRNA:   3'- guuaCCaCGcUGCGUGCUGCCGuauc -5'
26746 5' -53.2 NC_005808.1 + 28762 0.67 0.714937
Target:  5'- ---cGGUGCGcuucucgGCGCGC-ACGGCGUc- -3'
miRNA:   3'- guuaCCACGC-------UGCGUGcUGCCGUAuc -5'
26746 5' -53.2 NC_005808.1 + 2374 0.67 0.693763
Target:  5'- gCAAcGGUuCGAgGCGC-ACGGCAUGGc -3'
miRNA:   3'- -GUUaCCAcGCUgCGUGcUGCCGUAUC- -5'
26746 5' -53.2 NC_005808.1 + 31013 0.67 0.693763
Target:  5'- ---cGGccagccgGCGGCcCugGGCGGCAUGGc -3'
miRNA:   3'- guuaCCa------CGCUGcGugCUGCCGUAUC- -5'
26746 5' -53.2 NC_005808.1 + 24549 0.67 0.693762
Target:  5'- -cGUGGUcGCGcaGCGCgGCGAUGGCGa-- -3'
miRNA:   3'- guUACCA-CGC--UGCG-UGCUGCCGUauc -5'
26746 5' -53.2 NC_005808.1 + 38922 0.67 0.693762
Target:  5'- ---gGGUG-GAuuCGCACGAaGGCGUGGa -3'
miRNA:   3'- guuaCCACgCU--GCGUGCUgCCGUAUC- -5'
26746 5' -53.2 NC_005808.1 + 22077 0.67 0.68252
Target:  5'- ---cGGU-CGGCGCGCGGCucgauGGCGUGa -3'
miRNA:   3'- guuaCCAcGCUGCGUGCUG-----CCGUAUc -5'
26746 5' -53.2 NC_005808.1 + 4369 0.67 0.68252
Target:  5'- ---cGGUGCG-CGUgaagGCGACGGCcgAc -3'
miRNA:   3'- guuaCCACGCuGCG----UGCUGCCGuaUc -5'
26746 5' -53.2 NC_005808.1 + 13743 0.67 0.681393
Target:  5'- -cGUGGcGCGGCGCugGGacagcuuCGGCAa-- -3'
miRNA:   3'- guUACCaCGCUGCGugCU-------GCCGUauc -5'
26746 5' -53.2 NC_005808.1 + 27751 0.67 0.671227
Target:  5'- ---aGcGUGCGGCGCugGccgccaACGGCAUc- -3'
miRNA:   3'- guuaC-CACGCUGCGugC------UGCCGUAuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.