miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26747 3' -62.1 NC_005808.1 + 29089 0.66 0.343693
Target:  5'- gGGCgCCGAgGUcAGGcccgugcgggacuuGCUGCcggucacgcgcgcgaGGCCGCa -3'
miRNA:   3'- aCCGgGGCUgCA-UCC--------------UGACG---------------CCGGCG- -5'
26747 3' -62.1 NC_005808.1 + 35326 0.66 0.342892
Target:  5'- cGGCCCCGAgGccaAGcagcaguucaaGACcuggGCGGCCGa -3'
miRNA:   3'- aCCGGGGCUgCa--UC-----------CUGa---CGCCGGCg -5'
26747 3' -62.1 NC_005808.1 + 10288 0.66 0.342892
Target:  5'- cGGCCuuGAUGgcGGcgaUGaGGUCGCg -3'
miRNA:   3'- aCCGGggCUGCauCCug-ACgCCGGCG- -5'
26747 3' -62.1 NC_005808.1 + 7966 0.66 0.342891
Target:  5'- gUGGCCUCGGCGcgcaucGGGuuuccaUGUcGCCGCg -3'
miRNA:   3'- -ACCGGGGCUGCa-----UCCug----ACGcCGGCG- -5'
26747 3' -62.1 NC_005808.1 + 38211 0.66 0.342891
Target:  5'- aGGCCCggcgCGACGgcGccuGGCUGCGcauCCGCc -3'
miRNA:   3'- aCCGGG----GCUGCauC---CUGACGCc--GGCG- -5'
26747 3' -62.1 NC_005808.1 + 19393 0.66 0.341292
Target:  5'- aGGCCgaauucaCCGACG-AGGccgaccuGCUGCuGUCGCa -3'
miRNA:   3'- aCCGG-------GGCUGCaUCC-------UGACGcCGGCG- -5'
26747 3' -62.1 NC_005808.1 + 23532 0.66 0.33811
Target:  5'- gUGaCCUCGGCG-AGGAcacgcugaucgacgcCgccgGCGGCCGCu -3'
miRNA:   3'- -ACcGGGGCUGCaUCCU---------------Ga---CGCCGGCG- -5'
26747 3' -62.1 NC_005808.1 + 9200 0.66 0.334949
Target:  5'- uUGGCCUgcuCGGCGgcGcGGCgcacguucUGCGGCgCGCc -3'
miRNA:   3'- -ACCGGG---GCUGCauC-CUG--------ACGCCG-GCG- -5'
26747 3' -62.1 NC_005808.1 + 13008 0.66 0.334949
Target:  5'- cUGGCaaaCCGcGCGccuGGGC-GCGGCCGa -3'
miRNA:   3'- -ACCGg--GGC-UGCau-CCUGaCGCCGGCg -5'
26747 3' -62.1 NC_005808.1 + 637 0.66 0.332592
Target:  5'- cGGCgUCCGGCGUcgagucggugcccaAGG-CUGUagccaccaGGCCGCc -3'
miRNA:   3'- aCCG-GGGCUGCA--------------UCCuGACG--------CCGGCG- -5'
26747 3' -62.1 NC_005808.1 + 33152 0.66 0.31947
Target:  5'- aGGCCCuCGGCGU-GGAC-GCGaCCa- -3'
miRNA:   3'- aCCGGG-GCUGCAuCCUGaCGCcGGcg -5'
26747 3' -62.1 NC_005808.1 + 24045 0.66 0.31947
Target:  5'- cGGCCuccaCCGACGUGaucGACUuCGGCCa- -3'
miRNA:   3'- aCCGG----GGCUGCAUc--CUGAcGCCGGcg -5'
26747 3' -62.1 NC_005808.1 + 25139 0.66 0.311934
Target:  5'- aGGCCCUGGCGUGGcACc-UGGCCu- -3'
miRNA:   3'- aCCGGGGCUGCAUCcUGacGCCGGcg -5'
26747 3' -62.1 NC_005808.1 + 16993 0.66 0.311934
Target:  5'- cGcGCCgCCGugGUugccACUGCcugGGCCGCa -3'
miRNA:   3'- aC-CGG-GGCugCAucc-UGACG---CCGGCG- -5'
26747 3' -62.1 NC_005808.1 + 14786 0.66 0.297269
Target:  5'- gGGCagCGcGCGcgAGGacguGCUGCGGCUGCg -3'
miRNA:   3'- aCCGggGC-UGCa-UCC----UGACGCCGGCG- -5'
26747 3' -62.1 NC_005808.1 + 28822 0.66 0.297269
Target:  5'- aGcGCgCCGuCGUcGGGUUGCGGCCGg -3'
miRNA:   3'- aC-CGgGGCuGCAuCCUGACGCCGGCg -5'
26747 3' -62.1 NC_005808.1 + 4516 0.66 0.297269
Target:  5'- cGGCgCCCGugaACGUGGcGuGCUggGCGGUCGUg -3'
miRNA:   3'- aCCG-GGGC---UGCAUC-C-UGA--CGCCGGCG- -5'
26747 3' -62.1 NC_005808.1 + 12616 0.66 0.297269
Target:  5'- aUGGCgCCGACGcgcucGGcaucGCUGCuGCCGUc -3'
miRNA:   3'- -ACCGgGGCUGCau---CC----UGACGcCGGCG- -5'
26747 3' -62.1 NC_005808.1 + 8523 0.67 0.29014
Target:  5'- gGGCCgUGGCGUAGGcgaugaaacGCUcGaCaGCCGCg -3'
miRNA:   3'- aCCGGgGCUGCAUCC---------UGA-C-GcCGGCG- -5'
26747 3' -62.1 NC_005808.1 + 8212 0.67 0.29014
Target:  5'- cGGCCUCGuaguCGcgcuGGuCgGCGGCCGUc -3'
miRNA:   3'- aCCGGGGCu---GCau--CCuGaCGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.