Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26747 | 5' | -56.4 | NC_005808.1 | + | 39055 | 0.66 | 0.602116 |
|
Target: 5'- cGGUuGGCGggACUGCG-CGGuGUg- -3' miRNA: 3'- aCCAcCCGCaaUGGCGCaGCCuCAag -5' |
|||||||
| 26747 | 5' | -56.4 | NC_005808.1 | + | 17624 | 0.67 | 0.536464 |
|
Target: 5'- cUGGUGGGUGgg--CGCGUC-GAGUa- -3' miRNA: 3'- -ACCACCCGCaaugGCGCAGcCUCAag -5' |
|||||||
| 26747 | 5' | -56.4 | NC_005808.1 | + | 18052 | 0.67 | 0.504545 |
|
Target: 5'- uUGG-GGGCcUUACCgGCG-CGGGGUg- -3' miRNA: 3'- -ACCaCCCGcAAUGG-CGCaGCCUCAag -5' |
|||||||
| 26747 | 5' | -56.4 | NC_005808.1 | + | 4102 | 0.67 | 0.504545 |
|
Target: 5'- aGGUGGGCGgcGCUGaauuCGUCGcGGUcgUCg -3' miRNA: 3'- aCCACCCGCaaUGGC----GCAGCcUCA--AG- -5' |
|||||||
| 26747 | 5' | -56.4 | NC_005808.1 | + | 10584 | 0.68 | 0.453303 |
|
Target: 5'- -cGUGGGCGUccAgCGUGUCGaGGGUUUc -3' miRNA: 3'- acCACCCGCAa-UgGCGCAGC-CUCAAG- -5' |
|||||||
| 26747 | 5' | -56.4 | NC_005808.1 | + | 19502 | 0.68 | 0.433609 |
|
Target: 5'- -cGUGGGCGccGCCguugGCGUCGGGGc-- -3' miRNA: 3'- acCACCCGCaaUGG----CGCAGCCUCaag -5' |
|||||||
| 26747 | 5' | -56.4 | NC_005808.1 | + | 16165 | 1.1 | 0.000471 |
|
Target: 5'- gUGGUGGGCGUUACCGCGUCGGAGUUCa -3' miRNA: 3'- -ACCACCCGCAAUGGCGCAGCCUCAAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home