Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26748 | 3' | -50.3 | NC_005808.1 | + | 16982 | 1.07 | 0.002814 |
Target: 5'- aAAAUAACCCGCACCCAACUCGAUCACc -3' miRNA: 3'- -UUUAUUGGGCGUGGGUUGAGCUAGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 42185 | 0.66 | 0.863483 |
Target: 5'- -cGUGGCCCGCgacgugcuGCUCAACagUCGcgCGCu -3' miRNA: 3'- uuUAUUGGGCG--------UGGGUUG--AGCuaGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 41039 | 0.66 | 0.863483 |
Target: 5'- aGGAUAugCC-CAUCCAGC-CGGUCGa -3' miRNA: 3'- -UUUAUugGGcGUGGGUUGaGCUAGUg -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 28489 | 0.66 | 0.863483 |
Target: 5'- cGAgcAUCCGCucggcauuGCCgAACUCGGUCAUc -3' miRNA: 3'- uUUauUGGGCG--------UGGgUUGAGCUAGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 18541 | 0.67 | 0.806681 |
Target: 5'- --uUGGCCUG-GCCgAAgUCGAUCACg -3' miRNA: 3'- uuuAUUGGGCgUGGgUUgAGCUAGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 18135 | 0.68 | 0.775295 |
Target: 5'- ---gAACuuGuCGCCCGGCUCGcgCAg -3' miRNA: 3'- uuuaUUGggC-GUGGGUUGAGCuaGUg -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 11368 | 0.68 | 0.764476 |
Target: 5'- ---cGACCUGCucGCCCGGCaccUCGGUgGCg -3' miRNA: 3'- uuuaUUGGGCG--UGGGUUG---AGCUAgUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 32610 | 0.69 | 0.70718 |
Target: 5'- --cUGGCCCGCgucaaggGCCgCGACgccgCGGUCGCu -3' miRNA: 3'- uuuAUUGGGCG-------UGG-GUUGa---GCUAGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 33865 | 0.7 | 0.661789 |
Target: 5'- cGGUAGCgCCGCGCCC-GC-CGggCACa -3' miRNA: 3'- uUUAUUG-GGCGUGGGuUGaGCuaGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 14940 | 0.75 | 0.395234 |
Target: 5'- ---cGACUgCGCGCCCAACUCGGcgaugcUCGCg -3' miRNA: 3'- uuuaUUGG-GCGUGGGUUGAGCU------AGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 24509 | 0.72 | 0.556378 |
Target: 5'- ---gGGCUgGCGCCCAcGC-CGAUCACg -3' miRNA: 3'- uuuaUUGGgCGUGGGU-UGaGCUAGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 1145 | 0.71 | 0.591264 |
Target: 5'- --uUAGCUCGCGCUaCGGCggCGGUCACg -3' miRNA: 3'- uuuAUUGGGCGUGG-GUUGa-GCUAGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 12745 | 0.71 | 0.614735 |
Target: 5'- ---gGugCCGCGCCCAgacGCUUGG-CGCg -3' miRNA: 3'- uuuaUugGGCGUGGGU---UGAGCUaGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 20765 | 0.7 | 0.626502 |
Target: 5'- ----uGCgCCGCGCUCGACUC-AUCGCg -3' miRNA: 3'- uuuauUG-GGCGUGGGUUGAGcUAGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 25264 | 0.7 | 0.638275 |
Target: 5'- ----uGCUCGCGCU--GCUCGGUCACu -3' miRNA: 3'- uuuauUGGGCGUGGguUGAGCUAGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 22286 | 0.66 | 0.888303 |
Target: 5'- ---cAGCCCGCAUCgCAAC-CGGcCGCc -3' miRNA: 3'- uuuaUUGGGCGUGG-GUUGaGCUaGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 31178 | 0.7 | 0.626502 |
Target: 5'- ---cGACCUGCACgCCGGCUCGc-CGCu -3' miRNA: 3'- uuuaUUGGGCGUG-GGUUGAGCuaGUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 5027 | 0.69 | 0.70833 |
Target: 5'- ---cAGCgCCGCgauGCCCcGCUCGAUgGCg -3' miRNA: 3'- uuuaUUG-GGCG---UGGGuUGAGCUAgUG- -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 7465 | 0.69 | 0.731143 |
Target: 5'- cGAAUGGCCuUGCACCagGACUCGAcCAg -3' miRNA: 3'- -UUUAUUGG-GCGUGGg-UUGAGCUaGUg -5' |
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26748 | 3' | -50.3 | NC_005808.1 | + | 25582 | 0.68 | 0.753502 |
Target: 5'- -----uCCCGUucACCU-ACUCGGUCACg -3' miRNA: 3'- uuuauuGGGCG--UGGGuUGAGCUAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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