miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2675 3' -57.6 NC_001491.2 + 11219 0.66 0.865685
Target:  5'- gGAGAGCGGUagGGGaaaCGCCG-CCUG-GGa -3'
miRNA:   3'- gUUUUCGCCG--CUC---GCGGCaGGACgCC- -5'
2675 3' -57.6 NC_001491.2 + 104971 0.66 0.865685
Target:  5'- ----cGCGGCGGGgGCCG-CC-GCa- -3'
miRNA:   3'- guuuuCGCCGCUCgCGGCaGGaCGcc -5'
2675 3' -57.6 NC_001491.2 + 105004 0.66 0.865685
Target:  5'- ----cGCGGCGGGgGCCG-CC-GCa- -3'
miRNA:   3'- guuuuCGCCGCUCgCGGCaGGaCGcc -5'
2675 3' -57.6 NC_001491.2 + 105037 0.66 0.865685
Target:  5'- ----cGCGGCGGGgGCCG-CC-GCa- -3'
miRNA:   3'- guuuuCGCCGCUCgCGGCaGGaCGcc -5'
2675 3' -57.6 NC_001491.2 + 105070 0.66 0.865685
Target:  5'- ----cGCGGCGGGgGCCG-CC-GCa- -3'
miRNA:   3'- guuuuCGCCGCUCgCGGCaGGaCGcc -5'
2675 3' -57.6 NC_001491.2 + 105103 0.66 0.865685
Target:  5'- ----cGCGGCGGGgGCCG-CC-GCa- -3'
miRNA:   3'- guuuuCGCCGCUCgCGGCaGGaCGcc -5'
2675 3' -57.6 NC_001491.2 + 4792 0.66 0.864944
Target:  5'- --cGGGCGGCugggagcGGGCGCCGaagcuggagCCggaGCGGg -3'
miRNA:   3'- guuUUCGCCG-------CUCGCGGCa--------GGa--CGCC- -5'
2675 3' -57.6 NC_001491.2 + 132707 0.66 0.858189
Target:  5'- ----cGCGGUcAGCGCgGUCCUcaCGGa -3'
miRNA:   3'- guuuuCGCCGcUCGCGgCAGGAc-GCC- -5'
2675 3' -57.6 NC_001491.2 + 24478 0.66 0.858189
Target:  5'- uUAAGAGCGGCGGGUGgagaagacaCCGUa--GUGGg -3'
miRNA:   3'- -GUUUUCGCCGCUCGC---------GGCAggaCGCC- -5'
2675 3' -57.6 NC_001491.2 + 12177 0.66 0.858189
Target:  5'- ---cGGCGGCGAGCGagCG-CgCaGCGGa -3'
miRNA:   3'- guuuUCGCCGCUCGCg-GCaG-GaCGCC- -5'
2675 3' -57.6 NC_001491.2 + 34044 0.66 0.850495
Target:  5'- ---cGGCGGCGAGCccuucuCCGgcUCC-GCGGc -3'
miRNA:   3'- guuuUCGCCGCUCGc-----GGC--AGGaCGCC- -5'
2675 3' -57.6 NC_001491.2 + 2292 0.66 0.842609
Target:  5'- cCAGAGG-GGCucGCGCCGagagccgCCgggGCGGg -3'
miRNA:   3'- -GUUUUCgCCGcuCGCGGCa------GGa--CGCC- -5'
2675 3' -57.6 NC_001491.2 + 126958 0.66 0.834537
Target:  5'- --cAAGCgcgcaacgGGCGcGCGCCG-CCUGgCGGc -3'
miRNA:   3'- guuUUCG--------CCGCuCGCGGCaGGAC-GCC- -5'
2675 3' -57.6 NC_001491.2 + 27105 0.67 0.826286
Target:  5'- --cGGGCGGCccGGCGCCGcUCCggaGCGc -3'
miRNA:   3'- guuUUCGCCGc-UCGCGGC-AGGa--CGCc -5'
2675 3' -57.6 NC_001491.2 + 12527 0.67 0.826286
Target:  5'- ----cGCGGCG-GCgGCCGUggaCCgaGCGGg -3'
miRNA:   3'- guuuuCGCCGCuCG-CGGCA---GGa-CGCC- -5'
2675 3' -57.6 NC_001491.2 + 3685 0.67 0.791644
Target:  5'- uGAAGGCGGacggccuGGGCGCCcugGUCCccggaGCGGc -3'
miRNA:   3'- gUUUUCGCCg------CUCGCGG---CAGGa----CGCC- -5'
2675 3' -57.6 NC_001491.2 + 5307 0.67 0.791644
Target:  5'- ----cGCGGCGAGCcCCGgagCCggGCuGGg -3'
miRNA:   3'- guuuuCGCCGCUCGcGGCa--GGa-CG-CC- -5'
2675 3' -57.6 NC_001491.2 + 5721 0.67 0.782614
Target:  5'- gGAAGGuUGGCGGGUgGCCGguggcgggguUCCgcgGCGGg -3'
miRNA:   3'- gUUUUC-GCCGCUCG-CGGC----------AGGa--CGCC- -5'
2675 3' -57.6 NC_001491.2 + 10419 0.68 0.764168
Target:  5'- uCGGGAuCGGgGAGaCGCCG-CCgGCGGa -3'
miRNA:   3'- -GUUUUcGCCgCUC-GCGGCaGGaCGCC- -5'
2675 3' -57.6 NC_001491.2 + 17453 0.69 0.716216
Target:  5'- --cGAGCguaGGCGAGUcaaGCCGUUCUGUGc -3'
miRNA:   3'- guuUUCG---CCGCUCG---CGGCAGGACGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.