Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 2292 | 0.66 | 0.842609 |
Target: 5'- cCAGAGG-GGCucGCGCCGagagccgCCgggGCGGg -3' miRNA: 3'- -GUUUUCgCCGcuCGCGGCa------GGa--CGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 2954 | 0.69 | 0.716216 |
Target: 5'- gGGAGGCGGCcgccugagggGAGCggGCC-UUCUGCGGc -3' miRNA: 3'- gUUUUCGCCG----------CUCG--CGGcAGGACGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 3685 | 0.67 | 0.791644 |
Target: 5'- uGAAGGCGGacggccuGGGCGCCcugGUCCccggaGCGGc -3' miRNA: 3'- gUUUUCGCCg------CUCGCGG---CAGGa----CGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 3785 | 0.69 | 0.716216 |
Target: 5'- gCGGAcGCGGaccgaGGGCGCCGgggCCU-CGGg -3' miRNA: 3'- -GUUUuCGCCg----CUCGCGGCa--GGAcGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 4792 | 0.66 | 0.864944 |
Target: 5'- --cGGGCGGCugggagcGGGCGCCGaagcuggagCCggaGCGGg -3' miRNA: 3'- guuUUCGCCG-------CUCGCGGCa--------GGa--CGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 4919 | 0.69 | 0.693505 |
Target: 5'- gGAGAGcCGGCGGccgacgggguuuucGCGgCGUUCUGCGa -3' miRNA: 3'- gUUUUC-GCCGCU--------------CGCgGCAGGACGCc -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 5307 | 0.67 | 0.791644 |
Target: 5'- ----cGCGGCGAGCcCCGgagCCggGCuGGg -3' miRNA: 3'- guuuuCGCCGCUCGcGGCa--GGa-CG-CC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 5721 | 0.67 | 0.782614 |
Target: 5'- gGAAGGuUGGCGGGUgGCCGguggcgggguUCCgcgGCGGg -3' miRNA: 3'- gUUUUC-GCCGCUCG-CGGC----------AGGa--CGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 10127 | 0.71 | 0.596009 |
Target: 5'- -cGGAGCGGCGccGgGCCG-CCcGCGGa -3' miRNA: 3'- guUUUCGCCGCu-CgCGGCaGGaCGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 10419 | 0.68 | 0.764168 |
Target: 5'- uCGGGAuCGGgGAGaCGCCG-CCgGCGGa -3' miRNA: 3'- -GUUUUcGCCgCUC-GCGGCaGGaCGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 11219 | 0.66 | 0.865685 |
Target: 5'- gGAGAGCGGUagGGGaaaCGCCG-CCUG-GGa -3' miRNA: 3'- gUUUUCGCCG--CUC---GCGGCaGGACgCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 12177 | 0.66 | 0.858189 |
Target: 5'- ---cGGCGGCGAGCGagCG-CgCaGCGGa -3' miRNA: 3'- guuuUCGCCGCUCGCg-GCaG-GaCGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 12486 | 0.8 | 0.195699 |
Target: 5'- --cGGGCGGCGGGCGCCcgcggGUCCccgggGCGGg -3' miRNA: 3'- guuUUCGCCGCUCGCGG-----CAGGa----CGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 12527 | 0.67 | 0.826286 |
Target: 5'- ----cGCGGCG-GCgGCCGUggaCCgaGCGGg -3' miRNA: 3'- guuuuCGCCGCuCG-CGGCA---GGa-CGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 12555 | 0.81 | 0.156464 |
Target: 5'- gCGGGAGCGcGCGAGCGCCG-CCU-CGGg -3' miRNA: 3'- -GUUUUCGC-CGCUCGCGGCaGGAcGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 17453 | 0.69 | 0.716216 |
Target: 5'- --cGAGCguaGGCGAGUcaaGCCGUUCUGUGc -3' miRNA: 3'- guuUUCG---CCGCUCG---CGGCAGGACGCc -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 22408 | 0.69 | 0.716216 |
Target: 5'- -----uUGGUGGGCuGCCaGUUCUGCGGg -3' miRNA: 3'- guuuucGCCGCUCG-CGG-CAGGACGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 24478 | 0.66 | 0.858189 |
Target: 5'- uUAAGAGCGGCGGGUGgagaagacaCCGUa--GUGGg -3' miRNA: 3'- -GUUUUCGCCGCUCGC---------GGCAggaCGCC- -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 27105 | 0.67 | 0.826286 |
Target: 5'- --cGGGCGGCccGGCGCCGcUCCggaGCGc -3' miRNA: 3'- guuUUCGCCGc-UCGCGGC-AGGa--CGCc -5' |
|||||||
2675 | 3' | -57.6 | NC_001491.2 | + | 31467 | 0.72 | 0.497914 |
Target: 5'- gAGAAGCGGCGccCGUCGUCCgagcgcccgccGCGGa -3' miRNA: 3'- gUUUUCGCCGCucGCGGCAGGa----------CGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home