miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2675 3' -57.6 NC_001491.2 + 147184 0.69 0.716216
Target:  5'- -cAGGGCGGCGAGCGaCGgCgaGCGa -3'
miRNA:   3'- guUUUCGCCGCUCGCgGCaGgaCGCc -5'
2675 3' -57.6 NC_001491.2 + 132707 0.66 0.858189
Target:  5'- ----cGCGGUcAGCGCgGUCCUcaCGGa -3'
miRNA:   3'- guuuuCGCCGcUCGCGgCAGGAc-GCC- -5'
2675 3' -57.6 NC_001491.2 + 126958 0.66 0.834537
Target:  5'- --cAAGCgcgcaacgGGCGcGCGCCG-CCUGgCGGc -3'
miRNA:   3'- guuUUCG--------CCGCuCGCGGCaGGAC-GCC- -5'
2675 3' -57.6 NC_001491.2 + 105103 0.66 0.865685
Target:  5'- ----cGCGGCGGGgGCCG-CC-GCa- -3'
miRNA:   3'- guuuuCGCCGCUCgCGGCaGGaCGcc -5'
2675 3' -57.6 NC_001491.2 + 105070 0.66 0.865685
Target:  5'- ----cGCGGCGGGgGCCG-CC-GCa- -3'
miRNA:   3'- guuuuCGCCGCUCgCGGCaGGaCGcc -5'
2675 3' -57.6 NC_001491.2 + 105037 0.66 0.865685
Target:  5'- ----cGCGGCGGGgGCCG-CC-GCa- -3'
miRNA:   3'- guuuuCGCCGCUCgCGGCaGGaCGcc -5'
2675 3' -57.6 NC_001491.2 + 105004 0.66 0.865685
Target:  5'- ----cGCGGCGGGgGCCG-CC-GCa- -3'
miRNA:   3'- guuuuCGCCGCUCgCGGCaGGaCGcc -5'
2675 3' -57.6 NC_001491.2 + 104971 0.66 0.865685
Target:  5'- ----cGCGGCGGGgGCCG-CC-GCa- -3'
miRNA:   3'- guuuuCGCCGCUCgCGGCaGGaCGcc -5'
2675 3' -57.6 NC_001491.2 + 100173 0.75 0.37458
Target:  5'- cUAGGAGCGGUGucucGUGCCagcacgGUCCUGUGGg -3'
miRNA:   3'- -GUUUUCGCCGCu---CGCGG------CAGGACGCC- -5'
2675 3' -57.6 NC_001491.2 + 84370 0.71 0.585982
Target:  5'- gCAAGAGCGGCGAuaugcacgcaaGCGCCG-CCaUGacuGGg -3'
miRNA:   3'- -GUUUUCGCCGCU-----------CGCGGCaGG-ACg--CC- -5'
2675 3' -57.6 NC_001491.2 + 67281 1.1 0.001894
Target:  5'- aCAAAAGCGGCGAGCGCCGUCCUGCGGu -3'
miRNA:   3'- -GUUUUCGCCGCUCGCGGCAGGACGCC- -5'
2675 3' -57.6 NC_001491.2 + 48724 0.7 0.656462
Target:  5'- gCGAAucuGCGGCGAGguguguaacUGCCacGcCCUGCGGg -3'
miRNA:   3'- -GUUUu--CGCCGCUC---------GCGG--CaGGACGCC- -5'
2675 3' -57.6 NC_001491.2 + 34373 0.7 0.657468
Target:  5'- gCAAGAGCGGCaAGCGgCGcUCCgagccccuggagccgGCGGc -3'
miRNA:   3'- -GUUUUCGCCGcUCGCgGC-AGGa--------------CGCC- -5'
2675 3' -57.6 NC_001491.2 + 34177 0.71 0.597013
Target:  5'- -cAGAGCGGCGgaGGCGCCGgggcuacgaccgccaCCUGCu- -3'
miRNA:   3'- guUUUCGCCGC--UCGCGGCa--------------GGACGcc -5'
2675 3' -57.6 NC_001491.2 + 34044 0.66 0.850495
Target:  5'- ---cGGCGGCGAGCccuucuCCGgcUCC-GCGGc -3'
miRNA:   3'- guuuUCGCCGCUCGc-----GGC--AGGaCGCC- -5'
2675 3' -57.6 NC_001491.2 + 33841 0.73 0.479109
Target:  5'- ----cGCGGUGcGCGCCGUUCUgGUGGu -3'
miRNA:   3'- guuuuCGCCGCuCGCGGCAGGA-CGCC- -5'
2675 3' -57.6 NC_001491.2 + 33638 0.69 0.696485
Target:  5'- ----cGCGGCGGGgcgucCGCCGUCCc-CGGa -3'
miRNA:   3'- guuuuCGCCGCUC-----GCGGCAGGacGCC- -5'
2675 3' -57.6 NC_001491.2 + 31467 0.72 0.497914
Target:  5'- gAGAAGCGGCGccCGUCGUCCgagcgcccgccGCGGa -3'
miRNA:   3'- gUUUUCGCCGCucGCGGCAGGa----------CGCC- -5'
2675 3' -57.6 NC_001491.2 + 27105 0.67 0.826286
Target:  5'- --cGGGCGGCccGGCGCCGcUCCggaGCGc -3'
miRNA:   3'- guuUUCGCCGc-UCGCGGC-AGGa--CGCc -5'
2675 3' -57.6 NC_001491.2 + 24478 0.66 0.858189
Target:  5'- uUAAGAGCGGCGGGUGgagaagacaCCGUa--GUGGg -3'
miRNA:   3'- -GUUUUCGCCGCUCGC---------GGCAggaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.