miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2675 5' -58.6 NC_001491.2 + 1811 0.66 0.784161
Target:  5'- gUGUaGGccacguUGGAgGAGC-GGCaCAGCCUCa -3'
miRNA:   3'- -ACGaCC------ACCUgCUCGaCCG-GUUGGAG- -5'
2675 5' -58.6 NC_001491.2 + 33882 0.66 0.773986
Target:  5'- cGCUGGUGcGCuacaacgccgaggGGGCccgGGCCcgGGCCUCg -3'
miRNA:   3'- aCGACCACcUG-------------CUCGa--CCGG--UUGGAG- -5'
2675 5' -58.6 NC_001491.2 + 110721 0.66 0.765547
Target:  5'- cGCUGucgcGcCGAGUUGGCCAGCgUCu -3'
miRNA:   3'- aCGACcac-CuGCUCGACCGGUUGgAG- -5'
2675 5' -58.6 NC_001491.2 + 5327 0.66 0.765547
Target:  5'- gGCUGGgugccggGGACGccGGCUGGgCGGCa-- -3'
miRNA:   3'- aCGACCa------CCUGC--UCGACCgGUUGgag -5'
2675 5' -58.6 NC_001491.2 + 17108 0.66 0.762712
Target:  5'- aGUUGGUGGugGGuaagcguuguccGUcgagaaagagcaagUGGCCAACCa- -3'
miRNA:   3'- aCGACCACCugCU------------CG--------------ACCGGUUGGag -5'
2675 5' -58.6 NC_001491.2 + 32926 0.66 0.752232
Target:  5'- gGCU-GUGGGCGAccccgagauagucCUGGCC-GCCUCg -3'
miRNA:   3'- aCGAcCACCUGCUc------------GACCGGuUGGAG- -5'
2675 5' -58.6 NC_001491.2 + 43977 0.67 0.736764
Target:  5'- gGCgGGUGGcgACGgacAGCUGGCCcucucggagaGGCCUUc -3'
miRNA:   3'- aCGaCCACC--UGC---UCGACCGG----------UUGGAG- -5'
2675 5' -58.6 NC_001491.2 + 112528 0.67 0.717109
Target:  5'- cUGCUGGUGGGa-GGCguccacgggGGCCGACg-- -3'
miRNA:   3'- -ACGACCACCUgcUCGa--------CCGGUUGgag -5'
2675 5' -58.6 NC_001491.2 + 33579 0.67 0.707168
Target:  5'- aGCUcGG-GGACGccugcguGCUGGCCuGCCa- -3'
miRNA:   3'- aCGA-CCaCCUGCu------CGACCGGuUGGag -5'
2675 5' -58.6 NC_001491.2 + 148935 0.67 0.707168
Target:  5'- cGCUGGcugcgGGGgGAGaugggGGCCAGgCUCu -3'
miRNA:   3'- aCGACCa----CCUgCUCga---CCGGUUgGAG- -5'
2675 5' -58.6 NC_001491.2 + 96677 0.67 0.687107
Target:  5'- gGCUGGUGGGCaAGCUGuuUuuuaaguACCUCc -3'
miRNA:   3'- aCGACCACCUGcUCGACcgGu------UGGAG- -5'
2675 5' -58.6 NC_001491.2 + 135310 0.68 0.677004
Target:  5'- cGCUGGgGGA-GGGCgGGuCCAucaugGCCUCg -3'
miRNA:   3'- aCGACCaCCUgCUCGaCC-GGU-----UGGAG- -5'
2675 5' -58.6 NC_001491.2 + 37226 0.68 0.666865
Target:  5'- aUGCgggGGUGaGACGcgGGCUgggggGGCCAGgCUCu -3'
miRNA:   3'- -ACGa--CCAC-CUGC--UCGA-----CCGGUUgGAG- -5'
2675 5' -58.6 NC_001491.2 + 131040 0.69 0.595562
Target:  5'- gUGgUGGUGGAUGAGCgUGaCCAGCUcCa -3'
miRNA:   3'- -ACgACCACCUGCUCG-ACcGGUUGGaG- -5'
2675 5' -58.6 NC_001491.2 + 143001 0.69 0.575318
Target:  5'- cGCUagaGGUGGACaGAGCcaaauaGGCCAGCUa- -3'
miRNA:   3'- aCGA---CCACCUG-CUCGa-----CCGGUUGGag -5'
2675 5' -58.6 NC_001491.2 + 35934 0.69 0.575318
Target:  5'- aGCUGGUGGuuGAGCaccccGGCCcgAGCCcCg -3'
miRNA:   3'- aCGACCACCugCUCGa----CCGG--UUGGaG- -5'
2675 5' -58.6 NC_001491.2 + 2724 0.69 0.565253
Target:  5'- aGcCUGGUGGccCGGGgUGGCCAcCCUg -3'
miRNA:   3'- aC-GACCACCu-GCUCgACCGGUuGGAg -5'
2675 5' -58.6 NC_001491.2 + 94354 0.7 0.555235
Target:  5'- gGUUGG-GGGCauuaGAGCUGGCUccgaugaccgAGCCUCc -3'
miRNA:   3'- aCGACCaCCUG----CUCGACCGG----------UUGGAG- -5'
2675 5' -58.6 NC_001491.2 + 92843 0.72 0.449646
Target:  5'- cGCUGGUGGGggcUGAGCaggGGCUGGCUUg -3'
miRNA:   3'- aCGACCACCU---GCUCGa--CCGGUUGGAg -5'
2675 5' -58.6 NC_001491.2 + 68544 0.72 0.422773
Target:  5'- gUGCUGG-GGGCGAcGCUGGCacCGACaUCg -3'
miRNA:   3'- -ACGACCaCCUGCU-CGACCG--GUUGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.