miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26750 3' -52.9 NC_005808.1 + 32458 0.66 0.721618
Target:  5'- cGCCUUccagAAGAAagGAGGCGuGGccGGUACGAGg -3'
miRNA:   3'- -CGGAG----UUCUU--UUUCGC-CC--CCGUGCUU- -5'
26750 3' -52.9 NC_005808.1 + 13460 0.67 0.699072
Target:  5'- gGCCUCGGGc----GCGGugucGGGCAUGAc -3'
miRNA:   3'- -CGGAGUUCuuuuuCGCC----CCCGUGCUu -5'
26750 3' -52.9 NC_005808.1 + 15346 0.67 0.687686
Target:  5'- uGCCUCGGccAAGAGCcuGGGGCGCc-- -3'
miRNA:   3'- -CGGAGUUcuUUUUCGc-CCCCGUGcuu -5'
26750 3' -52.9 NC_005808.1 + 6876 0.68 0.618566
Target:  5'- gGCCUCGaacagaacGGGGAAAGCGaGGcGCACGu- -3'
miRNA:   3'- -CGGAGU--------UCUUUUUCGCcCC-CGUGCuu -5'
26750 3' -52.9 NC_005808.1 + 8983 0.68 0.59896
Target:  5'- cGCCUCGAuuuccucgccgcGCGGGGGCGCu-- -3'
miRNA:   3'- -CGGAGUUcuuuuu------CGCCCCCGUGcuu -5'
26750 3' -52.9 NC_005808.1 + 38345 0.68 0.595508
Target:  5'- cGCCUCAAGAccuacGGCGGGaagcuGGCA-GAAa -3'
miRNA:   3'- -CGGAGUUCUuuu--UCGCCC-----CCGUgCUU- -5'
26750 3' -52.9 NC_005808.1 + 22039 0.69 0.572586
Target:  5'- uGgCUCAuGAGcagcAAGCGGGGGCGCc-- -3'
miRNA:   3'- -CgGAGUuCUUu---UUCGCCCCCGUGcuu -5'
26750 3' -52.9 NC_005808.1 + 23570 0.69 0.561201
Target:  5'- cGCCggCAGGugcGGGCgGGGGGCgACGAu -3'
miRNA:   3'- -CGGa-GUUCuuuUUCG-CCCCCG-UGCUu -5'
26750 3' -52.9 NC_005808.1 + 632 0.7 0.516373
Target:  5'- aGCCUCGgcgcgggugaacGGGucAGGCGGGGGCuuuUGGu -3'
miRNA:   3'- -CGGAGU------------UCUuuUUCGCCCCCGu--GCUu -5'
26750 3' -52.9 NC_005808.1 + 10462 0.75 0.274554
Target:  5'- gGCCUUGAGGGAuu-CGGGGGCGuCGAGg -3'
miRNA:   3'- -CGGAGUUCUUUuucGCCCCCGU-GCUU- -5'
26750 3' -52.9 NC_005808.1 + 17922 1.09 0.001055
Target:  5'- cGCCUCAAGAAAAAGCGGGGGCACGAAg -3'
miRNA:   3'- -CGGAGUUCUUUUUCGCCCCCGUGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.