miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26751 3' -59.1 NC_005808.1 + 23471 0.68 0.386737
Target:  5'- gCCGGCGUGGAaCAGGuGCGCCgugggaaucucgaccUGCGg -3'
miRNA:   3'- -GGCCGCGCUUgGUCC-UGCGGaa-------------GCGC- -5'
26751 3' -59.1 NC_005808.1 + 23423 0.69 0.323106
Target:  5'- gCCGGUcaguGCGAcgccgGCCGGGAUGCggauggUUCGCGc -3'
miRNA:   3'- -GGCCG----CGCU-----UGGUCCUGCGg-----AAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 23282 0.67 0.407281
Target:  5'- gUCGGCGUGcGCCAcGaAUGCCUguUUGCGg -3'
miRNA:   3'- -GGCCGCGCuUGGUcC-UGCGGA--AGCGC- -5'
26751 3' -59.1 NC_005808.1 + 20804 0.67 0.434135
Target:  5'- gCCGGUGUccgccaaGAACCAGGACaucagcaccguGCCgg-GCGg -3'
miRNA:   3'- -GGCCGCG-------CUUGGUCCUG-----------CGGaagCGC- -5'
26751 3' -59.1 NC_005808.1 + 20317 0.69 0.307909
Target:  5'- gCCGGuUGCGAugCGGGcugGCCUUCaGUGg -3'
miRNA:   3'- -GGCC-GCGCUugGUCCug-CGGAAG-CGC- -5'
26751 3' -59.1 NC_005808.1 + 19729 0.67 0.425691
Target:  5'- aCC-GCGCGAACCAGaagcaGCCcaaUUCGCa -3'
miRNA:   3'- -GGcCGCGCUUGGUCcug--CGG---AAGCGc -5'
26751 3' -59.1 NC_005808.1 + 18094 1.09 0.000366
Target:  5'- gCCGGCGCGAACCAGGACGCCUUCGCGc -3'
miRNA:   3'- -GGCCGCGCUUGGUCCUGCGGAAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 17691 0.67 0.43508
Target:  5'- -aGGCGaagcgccacuCGGGCCGGGAaaUGCCcaUCGCGg -3'
miRNA:   3'- ggCCGC----------GCUUGGUCCU--GCGGa-AGCGC- -5'
26751 3' -59.1 NC_005808.1 + 17282 0.67 0.425691
Target:  5'- cCCGGCGaCGAgcGCCGGuGGCaggGCCggcCGCa -3'
miRNA:   3'- -GGCCGC-GCU--UGGUC-CUG---CGGaa-GCGc -5'
26751 3' -59.1 NC_005808.1 + 17232 0.67 0.398265
Target:  5'- uCUGGCGCcuGCCcGGugGCCggcuaUGCGa -3'
miRNA:   3'- -GGCCGCGcuUGGuCCugCGGaa---GCGC- -5'
26751 3' -59.1 NC_005808.1 + 17090 0.66 0.497824
Target:  5'- gCCGGCGCGGuucucgGCCGGGccuuggggcuugaccACGaagUUGCGg -3'
miRNA:   3'- -GGCCGCGCU------UGGUCC---------------UGCggaAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 16562 0.68 0.371998
Target:  5'- cCCGccGCGCGGGCUuuGAUGCCaUCGCc -3'
miRNA:   3'- -GGC--CGCGCUUGGucCUGCGGaAGCGc -5'
26751 3' -59.1 NC_005808.1 + 16263 0.66 0.45421
Target:  5'- gCGGCGCG-GCCAGuuCGCggugCGCGu -3'
miRNA:   3'- gGCCGCGCuUGGUCcuGCGgaa-GCGC- -5'
26751 3' -59.1 NC_005808.1 + 15141 0.69 0.31241
Target:  5'- gCGGCGCGcuggcauaccagcGCCAGGGCcugcggccGCCgggCGCGg -3'
miRNA:   3'- gGCCGCGCu------------UGGUCCUG--------CGGaa-GCGC- -5'
26751 3' -59.1 NC_005808.1 + 14892 0.69 0.307909
Target:  5'- aCCGGCgGCGAGCCGc--UGCCggCGCGc -3'
miRNA:   3'- -GGCCG-CGCUUGGUccuGCGGaaGCGC- -5'
26751 3' -59.1 NC_005808.1 + 14764 0.69 0.338855
Target:  5'- gCGGCGCG-GCC-GG-CGCCacCGCGg -3'
miRNA:   3'- gGCCGCGCuUGGuCCuGCGGaaGCGC- -5'
26751 3' -59.1 NC_005808.1 + 14413 0.66 0.483734
Target:  5'- gCUGG-GCGucGCCAGGcGCGCCU--GCGg -3'
miRNA:   3'- -GGCCgCGCu-UGGUCC-UGCGGAagCGC- -5'
26751 3' -59.1 NC_005808.1 + 14319 0.67 0.445544
Target:  5'- aCUGGCGCGcgccuuggcugaacuGCCGGGcCuGCUggUUCGCGg -3'
miRNA:   3'- -GGCCGCGCu--------------UGGUCCuG-CGG--AAGCGC- -5'
26751 3' -59.1 NC_005808.1 + 13252 0.68 0.37802
Target:  5'- aCCGGCGCGugguucgaggacuuGGCCGGcGAcCGCCacCGCc -3'
miRNA:   3'- -GGCCGCGC--------------UUGGUC-CU-GCGGaaGCGc -5'
26751 3' -59.1 NC_005808.1 + 13058 0.67 0.444587
Target:  5'- aCGGCGUGGguguccucugcgGCCAGGGggcacaGCCUgucgUCGCc -3'
miRNA:   3'- gGCCGCGCU------------UGGUCCUg-----CGGA----AGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.