miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26751 5' -55.6 NC_005808.1 + 41902 0.66 0.657349
Target:  5'- gGCGguau-CUUGggCGCCCGGCcggCGCc -3'
miRNA:   3'- aUGCagcuuGAACa-GCGGGCCGa--GCG- -5'
26751 5' -55.6 NC_005808.1 + 41268 0.66 0.657349
Target:  5'- cACGgcuuccUCGcGCUUGUCgGCCUGGUggccgUCGCc -3'
miRNA:   3'- aUGC------AGCuUGAACAG-CGGGCCG-----AGCG- -5'
26751 5' -55.6 NC_005808.1 + 27187 0.66 0.646209
Target:  5'- uUGCG-CGuGCaucgGUCGUCCGGCaucuUCGCc -3'
miRNA:   3'- -AUGCaGCuUGaa--CAGCGGGCCG----AGCG- -5'
26751 5' -55.6 NC_005808.1 + 8507 0.66 0.639519
Target:  5'- cACGUCGAugccCUugaUGUCGCC-GGCgaacuugcccagguaUCGCa -3'
miRNA:   3'- aUGCAGCUu---GA---ACAGCGGgCCG---------------AGCG- -5'
26751 5' -55.6 NC_005808.1 + 28241 0.66 0.601622
Target:  5'- cGgGUCGGACUg--CGCCaGGCUCa- -3'
miRNA:   3'- aUgCAGCUUGAacaGCGGgCCGAGcg -5'
26751 5' -55.6 NC_005808.1 + 26135 0.66 0.601622
Target:  5'- -uCGUCGcggcaGAUUUGgCGCagCGGCUCGCc -3'
miRNA:   3'- auGCAGC-----UUGAACaGCGg-GCCGAGCG- -5'
26751 5' -55.6 NC_005808.1 + 11063 0.66 0.601622
Target:  5'- gGCGaCGAACUgcucgaacgUGUCCGGgUCGCg -3'
miRNA:   3'- aUGCaGCUUGAaca------GCGGGCCgAGCG- -5'
26751 5' -55.6 NC_005808.1 + 5034 0.66 0.601622
Target:  5'- cUGCGUUGAuau--UCGCCUGGUUgGCg -3'
miRNA:   3'- -AUGCAGCUugaacAGCGGGCCGAgCG- -5'
26751 5' -55.6 NC_005808.1 + 20619 0.67 0.57945
Target:  5'- gGCGUCGcaggucggUGUCgGCCUGcGCUCGUu -3'
miRNA:   3'- aUGCAGCuuga----ACAG-CGGGC-CGAGCG- -5'
26751 5' -55.6 NC_005808.1 + 12655 0.67 0.57945
Target:  5'- gGCGUCGggUc-GUCGCCCaucaugcgcaGGCgCGUg -3'
miRNA:   3'- aUGCAGCuuGaaCAGCGGG----------CCGaGCG- -5'
26751 5' -55.6 NC_005808.1 + 42381 0.67 0.545462
Target:  5'- aAUGcCGAggugcgccaguucGCcgUGUCGCCCGGCagCGUg -3'
miRNA:   3'- aUGCaGCU-------------UGa-ACAGCGGGCCGa-GCG- -5'
26751 5' -55.6 NC_005808.1 + 9856 0.67 0.535709
Target:  5'- gGCGUCGAugagcGUgGCaCCGGCgCGCu -3'
miRNA:   3'- aUGCAGCUugaa-CAgCG-GGCCGaGCG- -5'
26751 5' -55.6 NC_005808.1 + 28328 0.68 0.524946
Target:  5'- gGCGUCGGACUcgaUGgccuuggccUCGUCgGGCagCGCg -3'
miRNA:   3'- aUGCAGCUUGA---AC---------AGCGGgCCGa-GCG- -5'
26751 5' -55.6 NC_005808.1 + 27399 0.68 0.503675
Target:  5'- cAUGUCGcuCUUGUagucgucgcgCGCCUGGCgcacCGCg -3'
miRNA:   3'- aUGCAGCuuGAACA----------GCGGGCCGa---GCG- -5'
26751 5' -55.6 NC_005808.1 + 12864 0.68 0.503675
Target:  5'- gUugGUC-AGCUUGUUguagaGCCacaGGCUCGUg -3'
miRNA:   3'- -AugCAGcUUGAACAG-----CGGg--CCGAGCG- -5'
26751 5' -55.6 NC_005808.1 + 6418 0.68 0.482786
Target:  5'- -uCGUCGAACUcGUC-CUCG-CUCGCg -3'
miRNA:   3'- auGCAGCUUGAaCAGcGGGCcGAGCG- -5'
26751 5' -55.6 NC_005808.1 + 15864 0.69 0.452266
Target:  5'- aGCGggCGcGCUggcgGUgGCCCGGCuUUGCa -3'
miRNA:   3'- aUGCa-GCuUGAa---CAgCGGGCCG-AGCG- -5'
26751 5' -55.6 NC_005808.1 + 14683 0.69 0.442328
Target:  5'- -gUGUUGAgcGCUUGaaGCCCGGCcUGCa -3'
miRNA:   3'- auGCAGCU--UGAACagCGGGCCGaGCG- -5'
26751 5' -55.6 NC_005808.1 + 21996 0.69 0.422829
Target:  5'- aGCGUgCGggUUUcGUcggCGCCUGGCUCGa -3'
miRNA:   3'- aUGCA-GCuuGAA-CA---GCGGGCCGAGCg -5'
26751 5' -55.6 NC_005808.1 + 32998 0.7 0.394573
Target:  5'- aACGUCGAACUca-CGCCCgaGGUgCGCa -3'
miRNA:   3'- aUGCAGCUUGAacaGCGGG--CCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.