Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26751 | 5' | -55.6 | NC_005808.1 | + | 32998 | 0.7 | 0.394573 |
Target: 5'- aACGUCGAACUca-CGCCCgaGGUgCGCa -3' miRNA: 3'- aUGCAGCUUGAacaGCGGG--CCGaGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 11329 | 0.8 | 0.085239 |
Target: 5'- cACGUCGGggucaACgaauaucacGUCGCCCGGCUCGUa -3' miRNA: 3'- aUGCAGCU-----UGaa-------CAGCGGGCCGAGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 41902 | 0.66 | 0.657349 |
Target: 5'- gGCGguau-CUUGggCGCCCGGCcggCGCc -3' miRNA: 3'- aUGCagcuuGAACa-GCGGGCCGa--GCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 27187 | 0.66 | 0.646209 |
Target: 5'- uUGCG-CGuGCaucgGUCGUCCGGCaucuUCGCc -3' miRNA: 3'- -AUGCaGCuUGaa--CAGCGGGCCG----AGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 7687 | 0.75 | 0.182939 |
Target: 5'- -uCGUCGGGCUUGaccucggCGgCCGGCUUGCc -3' miRNA: 3'- auGCAGCUUGAACa------GCgGGCCGAGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 41268 | 0.66 | 0.657349 |
Target: 5'- cACGgcuuccUCGcGCUUGUCgGCCUGGUggccgUCGCc -3' miRNA: 3'- aUGC------AGCuUGAACAG-CGGGCCG-----AGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 42381 | 0.67 | 0.545462 |
Target: 5'- aAUGcCGAggugcgccaguucGCcgUGUCGCCCGGCagCGUg -3' miRNA: 3'- aUGCaGCU-------------UGa-ACAGCGGGCCGa-GCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 15864 | 0.69 | 0.452266 |
Target: 5'- aGCGggCGcGCUggcgGUgGCCCGGCuUUGCa -3' miRNA: 3'- aUGCa-GCuUGAa---CAgCGGGCCG-AGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 6418 | 0.68 | 0.482786 |
Target: 5'- -uCGUCGAACUcGUC-CUCG-CUCGCg -3' miRNA: 3'- auGCAGCUUGAaCAGcGGGCcGAGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 21996 | 0.69 | 0.422829 |
Target: 5'- aGCGUgCGggUUUcGUcggCGCCUGGCUCGa -3' miRNA: 3'- aUGCA-GCuuGAA-CA---GCGGGCCGAGCg -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 8507 | 0.66 | 0.639519 |
Target: 5'- cACGUCGAugccCUugaUGUCGCC-GGCgaacuugcccagguaUCGCa -3' miRNA: 3'- aUGCAGCUu---GA---ACAGCGGgCCG---------------AGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 28241 | 0.66 | 0.601622 |
Target: 5'- cGgGUCGGACUg--CGCCaGGCUCa- -3' miRNA: 3'- aUgCAGCUUGAacaGCGGgCCGAGcg -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 25572 | 0.74 | 0.215227 |
Target: 5'- gGCGUCGGAgUUGUaCGCCgCGGUcUGCg -3' miRNA: 3'- aUGCAGCUUgAACA-GCGG-GCCGaGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 5034 | 0.66 | 0.601622 |
Target: 5'- cUGCGUUGAuau--UCGCCUGGUUgGCg -3' miRNA: 3'- -AUGCAGCUugaacAGCGGGCCGAgCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 20619 | 0.67 | 0.57945 |
Target: 5'- gGCGUCGcaggucggUGUCgGCCUGcGCUCGUu -3' miRNA: 3'- aUGCAGCuuga----ACAG-CGGGC-CGAGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 12655 | 0.67 | 0.57945 |
Target: 5'- gGCGUCGggUc-GUCGCCCaucaugcgcaGGCgCGUg -3' miRNA: 3'- aUGCAGCuuGaaCAGCGGG----------CCGaGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 9856 | 0.67 | 0.535709 |
Target: 5'- gGCGUCGAugagcGUgGCaCCGGCgCGCu -3' miRNA: 3'- aUGCAGCUugaa-CAgCG-GGCCGaGCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 40350 | 0.71 | 0.350284 |
Target: 5'- cGCGUCGAACUgccgGcCaagGCCCGGCguuuauacCGCg -3' miRNA: 3'- aUGCAGCUUGAa---CaG---CGGGCCGa-------GCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 27399 | 0.68 | 0.503675 |
Target: 5'- cAUGUCGcuCUUGUagucgucgcgCGCCUGGCgcacCGCg -3' miRNA: 3'- aUGCAGCuuGAACA----------GCGGGCCGa---GCG- -5' |
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26751 | 5' | -55.6 | NC_005808.1 | + | 29621 | 0.7 | 0.376428 |
Target: 5'- aGCGcCGGgcGCUUGUgGCCgGGCUUGa -3' miRNA: 3'- aUGCaGCU--UGAACAgCGGgCCGAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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