Results 41 - 58 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 39503 | 0.69 | 0.253994 |
Target: 5'- uUCGGUGGuuGCCGCGU-GuCGAAGGg -3' miRNA: 3'- cGGCCACCgcCGGUGCAgCcGCUUCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 30158 | 0.69 | 0.245898 |
Target: 5'- cGUCGGacaucagcggcaguUGGC-GCCA-GUCGGUGAAGGc -3' miRNA: 3'- -CGGCC--------------ACCGcCGGUgCAGCCGCUUCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 24298 | 0.69 | 0.235634 |
Target: 5'- cGUgGG-GGCGGUgAgGUCGGCGAgcagccgcGGGu -3' miRNA: 3'- -CGgCCaCCGCCGgUgCAGCCGCU--------UCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 23184 | 0.7 | 0.229766 |
Target: 5'- uGCUGGUgcgacagcagcaGGuCGGCCuCGUCGGUGAAu- -3' miRNA: 3'- -CGGCCA------------CC-GCCGGuGCAGCCGCUUcc -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 27119 | 0.7 | 0.206986 |
Target: 5'- uGCCGGUGGCgaugcaacuggacGGCaGCuUCGGCcAAGGg -3' miRNA: 3'- -CGGCCACCG-------------CCGgUGcAGCCGcUUCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 14026 | 0.7 | 0.2184 |
Target: 5'- uGCCGGUGGCcgacgugcGcGCCGCGauggcCGGCGGccgcaAGGu -3' miRNA: 3'- -CGGCCACCG--------C-CGGUGCa----GCCGCU-----UCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 5146 | 0.71 | 0.17765 |
Target: 5'- uGCCGcgcaGGCGGCCGuCGcugcucacgcccUUGGCGAGGGu -3' miRNA: 3'- -CGGCca--CCGCCGGU-GC------------AGCCGCUUCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 41119 | 0.71 | 0.17765 |
Target: 5'- aGCCGGUGGCGGaaGaagaaCGGCGucGAGGa -3' miRNA: 3'- -CGGCCACCGCCggUgca--GCCGC--UUCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 2823 | 0.72 | 0.143797 |
Target: 5'- gGCCaGGUGcucGCGGCCACGcgcagCGGCGccagcaccagcGAGGg -3' miRNA: 3'- -CGG-CCAC---CGCCGGUGCa----GCCGC-----------UUCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 10739 | 0.72 | 0.151663 |
Target: 5'- uGCaCGGcgagGGCGuGCCGCaggaauucuucGUCGGUGAGGGu -3' miRNA: 3'- -CG-GCCa---CCGC-CGGUG-----------CAGCCGCUUCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 4274 | 0.72 | 0.147683 |
Target: 5'- cGCCGGcaUGGUgauGGCCGUGUCGGCGGu-- -3' miRNA: 3'- -CGGCC--ACCG---CCGGUGCAGCCGCUucc -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 8219 | 0.73 | 0.132697 |
Target: 5'- gGCCaguucGUGcGCGGCCGugcccuCGUCGGCGAAGu -3' miRNA: 3'- -CGGc----CAC-CGCCGGU------GCAGCCGCUUCc -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 9310 | 0.75 | 0.08819 |
Target: 5'- cUCGGcgaccUGGCGGCgCACGUCGGCGcggcGGGc -3' miRNA: 3'- cGGCC-----ACCGCCG-GUGCAGCCGCu---UCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 21591 | 0.76 | 0.082081 |
Target: 5'- uUCGGUGGCGGUCAucugcggauuggugcCGUUGGCGAgcaugAGGa -3' miRNA: 3'- cGGCCACCGCCGGU---------------GCAGCCGCU-----UCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 18563 | 0.76 | 0.085791 |
Target: 5'- cGUCGGUGGaGGCCGCGcucgCGGUGAcGGc -3' miRNA: 3'- -CGGCCACCgCCGGUGCa---GCCGCUuCC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 37024 | 0.79 | 0.046411 |
Target: 5'- -aCGGUGGCGGCCAgCGUUGGCGccGu -3' miRNA: 3'- cgGCCACCGCCGGU-GCAGCCGCuuCc -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 3740 | 0.83 | 0.024864 |
Target: 5'- cGCCGGUGGUGGgCACGUCGGUGccgccgcuGGa -3' miRNA: 3'- -CGGCCACCGCCgGUGCAGCCGCuu------CC- -5' |
|||||||
26752 | 3' | -61.1 | NC_005808.1 | + | 18398 | 1.11 | 0.00017 |
Target: 5'- cGCCGGUGGCGGCCACGUCGGCGAAGGu -3' miRNA: 3'- -CGGCCACCGCCGGUGCAGCCGCUUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home