miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26752 3' -61.1 NC_005808.1 + 18563 0.76 0.085791
Target:  5'- cGUCGGUGGaGGCCGCGcucgCGGUGAcGGc -3'
miRNA:   3'- -CGGCCACCgCCGGUGCa---GCCGCUuCC- -5'
26752 3' -61.1 NC_005808.1 + 21591 0.76 0.082081
Target:  5'- uUCGGUGGCGGUCAucugcggauuggugcCGUUGGCGAgcaugAGGa -3'
miRNA:   3'- cGGCCACCGCCGGU---------------GCAGCCGCU-----UCC- -5'
26752 3' -61.1 NC_005808.1 + 3740 0.83 0.024864
Target:  5'- cGCCGGUGGUGGgCACGUCGGUGccgccgcuGGa -3'
miRNA:   3'- -CGGCCACCGCCgGUGCAGCCGCuu------CC- -5'
26752 3' -61.1 NC_005808.1 + 15376 0.69 0.266877
Target:  5'- cUCGGUGaGCGcGuCCGCGUgcgggcCGGCGAAGa -3'
miRNA:   3'- cGGCCAC-CGC-C-GGUGCA------GCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 33734 0.69 0.269516
Target:  5'- gGCCGaacGCuaccgcaccguccugGGCUACGUCGGCGAGGa -3'
miRNA:   3'- -CGGCcacCG---------------CCGGUGCAGCCGCUUCc -5'
26752 3' -61.1 NC_005808.1 + 29364 0.66 0.389048
Target:  5'- cGCCGGUGGCcuuGCCccagcccucggAC-UCGGCGcgguAGGc -3'
miRNA:   3'- -CGGCCACCGc--CGG-----------UGcAGCCGCu---UCC- -5'
26752 3' -61.1 NC_005808.1 + 10928 0.66 0.38818
Target:  5'- cGCCGGUuugcagggccucgGGCaGUUGCG-CGGCGAcagccGGGg -3'
miRNA:   3'- -CGGCCA-------------CCGcCGGUGCaGCCGCU-----UCC- -5'
26752 3' -61.1 NC_005808.1 + 19040 0.66 0.363552
Target:  5'- cCUGGUaGCGGCCGCcggCGGCGucGa -3'
miRNA:   3'- cGGCCAcCGCCGGUGca-GCCGCuuCc -5'
26752 3' -61.1 NC_005808.1 + 4801 0.67 0.355314
Target:  5'- cGCCGGcUGGC-GCUGCGggauugcuggcCGGCGAcAGGu -3'
miRNA:   3'- -CGGCC-ACCGcCGGUGCa----------GCCGCU-UCC- -5'
26752 3' -61.1 NC_005808.1 + 1348 0.67 0.355314
Target:  5'- aGCCguGGUcGGCGGCCuuGCGcaucCGGCGAc-- -3'
miRNA:   3'- -CGG--CCA-CCGCCGG--UGCa---GCCGCUucc -5'
26752 3' -61.1 NC_005808.1 + 26269 0.67 0.339236
Target:  5'- cGCCGGccUGGuCGGCuCGCGcaucgCGcGCGAuGGa -3'
miRNA:   3'- -CGGCC--ACC-GCCG-GUGCa----GC-CGCUuCC- -5'
26752 3' -61.1 NC_005808.1 + 27500 0.67 0.331398
Target:  5'- uGCCGGcGGCcucGGCCGCcagcuucUCGGCGcggucGGGg -3'
miRNA:   3'- -CGGCCaCCG---CCGGUGc------AGCCGCu----UCC- -5'
26752 3' -61.1 NC_005808.1 + 29327 0.67 0.331398
Target:  5'- aGgCGGUGGCGGUCGC--CGGCcAAGu -3'
miRNA:   3'- -CgGCCACCGCCGGUGcaGCCGcUUCc -5'
26752 3' -61.1 NC_005808.1 + 26050 0.67 0.316123
Target:  5'- cGCgCGGcgGGCGcGCUccauGCGcUCGGCGAacucGGGg -3'
miRNA:   3'- -CG-GCCa-CCGC-CGG----UGC-AGCCGCU----UCC- -5'
26752 3' -61.1 NC_005808.1 + 24003 0.67 0.316123
Target:  5'- aCUGGcgaaGGUGGgCGCGUCGGCcaauucagcGAAGGc -3'
miRNA:   3'- cGGCCa---CCGCCgGUGCAGCCG---------CUUCC- -5'
26752 3' -61.1 NC_005808.1 + 13306 0.68 0.308687
Target:  5'- cGCCGG-GGcCGGCguUGUaggCGGCGuAGGc -3'
miRNA:   3'- -CGGCCaCC-GCCGguGCA---GCCGCuUCC- -5'
26752 3' -61.1 NC_005808.1 + 23737 0.68 0.294218
Target:  5'- cUCGGUGGCGcgcagcagcGCCAUGcCGGCGccaccGGGc -3'
miRNA:   3'- cGGCCACCGC---------CGGUGCaGCCGCu----UCC- -5'
26752 3' -61.1 NC_005808.1 + 18398 1.11 0.00017
Target:  5'- cGCCGGUGGCGGCCACGUCGGCGAAGGu -3'
miRNA:   3'- -CGGCCACCGCCGGUGCAGCCGCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.