Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26753 | 3' | -60.5 | NC_005808.1 | + | 11254 | 0.66 | 0.387223 |
Target: 5'- uGG-CGAUGAGGguuuGCGCUgcgGCGCUGg -3' miRNA: 3'- -CCaGCUACUCCagc-CGCGGg--CGCGAC- -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 25286 | 0.66 | 0.369955 |
Target: 5'- cGUCGAaugccuUGAGGUCGuGCGgCCgGCcCUGc -3' miRNA: 3'- cCAGCU------ACUCCAGC-CGC-GGgCGcGAC- -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 15020 | 0.66 | 0.369955 |
Target: 5'- -cUCGAUGguguccgcguuGGuGUUGGCgauGCCCGCGUUGa -3' miRNA: 3'- ccAGCUAC-----------UC-CAGCCG---CGGGCGCGAC- -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 11488 | 0.66 | 0.369955 |
Target: 5'- uGGUCGccUGcgacaccgcaaAGGgCaGCGCCUGCGCUGg -3' miRNA: 3'- -CCAGCu-AC-----------UCCaGcCGCGGGCGCGAC- -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 6611 | 0.67 | 0.36152 |
Target: 5'- uGUCGAUGAccagcGGgcgcgUGGCGCUgCGCGCg- -3' miRNA: 3'- cCAGCUACU-----CCa----GCCGCGG-GCGCGac -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 4820 | 0.67 | 0.353221 |
Target: 5'- ------aGAGGUCGGgGCCgGCGCc- -3' miRNA: 3'- ccagcuaCUCCAGCCgCGGgCGCGac -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 12380 | 0.67 | 0.353221 |
Target: 5'- cGGUCGgcGA-GUCGaUGCCUGCGCg- -3' miRNA: 3'- -CCAGCuaCUcCAGCcGCGGGCGCGac -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 3743 | 0.67 | 0.353221 |
Target: 5'- cGGU-GGUGGGcacGUCGGUGCCgC-CGCUGg -3' miRNA: 3'- -CCAgCUACUC---CAGCCGCGG-GcGCGAC- -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 35167 | 0.67 | 0.337029 |
Target: 5'- cGUCGAggaAGuGUCcgGGCGCCCGCuGCUc -3' miRNA: 3'- cCAGCUac-UC-CAG--CCGCGGGCG-CGAc -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 9858 | 0.68 | 0.313769 |
Target: 5'- cGUCGAUGAGcGU-GGCaCCggCGCGCUGc -3' miRNA: 3'- cCAGCUACUC-CAgCCGcGG--GCGCGAC- -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 10852 | 0.68 | 0.30629 |
Target: 5'- uGGUCGAgcaggcccugcgUGGcuucGGUCGGCGCgaUGCGCg- -3' miRNA: 3'- -CCAGCU------------ACU----CCAGCCGCGg-GCGCGac -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 40565 | 0.68 | 0.298949 |
Target: 5'- cGUCGccGAGG-CGGCcgguauGCCgGUGCUGg -3' miRNA: 3'- cCAGCuaCUCCaGCCG------CGGgCGCGAC- -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 25513 | 0.68 | 0.298949 |
Target: 5'- aGGcccgCGAUGAGGUCGGUuuugccgccGCCgGCaGCg- -3' miRNA: 3'- -CCa---GCUACUCCAGCCG---------CGGgCG-CGac -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 18563 | 0.68 | 0.298949 |
Target: 5'- cGUCGGUgGAGG-CcGCGCUCGCGgUGa -3' miRNA: 3'- cCAGCUA-CUCCaGcCGCGGGCGCgAC- -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 25480 | 0.68 | 0.298949 |
Target: 5'- --aCGAUGAGGgc-GCGCUCGUGCUu -3' miRNA: 3'- ccaGCUACUCCagcCGCGGGCGCGAc -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 20621 | 0.68 | 0.284677 |
Target: 5'- cGUCGc--AGGUCGGUgucgGCCUGCGCUc -3' miRNA: 3'- cCAGCuacUCCAGCCG----CGGGCGCGAc -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 30391 | 0.68 | 0.277745 |
Target: 5'- gGGUCGGUGAuaaCGGCGUCCaCGCUu -3' miRNA: 3'- -CCAGCUACUccaGCCGCGGGcGCGAc -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 35211 | 0.7 | 0.221325 |
Target: 5'- uGGUgGA--AGGUcgccgCGGUGCCCGcCGCUGg -3' miRNA: 3'- -CCAgCUacUCCA-----GCCGCGGGC-GCGAC- -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 17556 | 0.72 | 0.161547 |
Target: 5'- uGGUCaGaAUGAuGUCGGCGCCgGUGUUGu -3' miRNA: 3'- -CCAG-C-UACUcCAGCCGCGGgCGCGAC- -5' |
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26753 | 3' | -60.5 | NC_005808.1 | + | 14839 | 0.72 | 0.157284 |
Target: 5'- aGGUCGAUGccGUUGGCGgCCaGCGCc- -3' miRNA: 3'- -CCAGCUACucCAGCCGCgGG-CGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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