Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26753 | 5' | -51.2 | NC_005808.1 | + | 21454 | 0.66 | 0.836799 |
Target: 5'- -cCAGggcgCGGACACGgcggCCAagcugGGCa -3' miRNA: 3'- caGUCaa--GCCUGUGCa---GGUguaa-CCG- -5' |
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26753 | 5' | -51.2 | NC_005808.1 | + | 14741 | 0.67 | 0.798049 |
Target: 5'- --gAGcgCGGACACGUUCuugaGCAgcGGCg -3' miRNA: 3'- cagUCaaGCCUGUGCAGG----UGUaaCCG- -5' |
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26753 | 5' | -51.2 | NC_005808.1 | + | 7571 | 0.74 | 0.424634 |
Target: 5'- -cCGGcUUGGACACGUCCACGaagucgucGGCg -3' miRNA: 3'- caGUCaAGCCUGUGCAGGUGUaa------CCG- -5' |
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26753 | 5' | -51.2 | NC_005808.1 | + | 5245 | 0.66 | 0.879897 |
Target: 5'- -gCAGUUCGGccgGCAgGUCgGgGUcGGCa -3' miRNA: 3'- caGUCAAGCC---UGUgCAGgUgUAaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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